Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20805

Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13915 and BBR_RS20805 are separated by 366 nucleotidesBBR_RS20805 and BBR_RS13925 are separated by 138 nucleotides BBR_RS13915: BBR_RS13915 - argininosuccinate synthase, at 901,300 to 902,538 _RS13915 BBR_RS20805: BBR_RS20805 - hypothetical protein, at 902,905 to 903,759 _RS20805 BBR_RS13925: BBR_RS13925 - IS21 family transposase, at 903,898 to 905,379 _RS13925 Position (kb) 902 903 904Strain fitness (log2 ratio) -2 -1 0 1 2at 901.905 kb on + strand, within BBR_RS13915at 901.905 kb on + strand, within BBR_RS13915at 901.911 kb on + strand, within BBR_RS13915at 901.919 kb on - strand, within BBR_RS13915at 901.940 kb on - strand, within BBR_RS13915at 901.998 kb on - strand, within BBR_RS13915at 902.019 kb on - strand, within BBR_RS13915at 902.021 kb on + strand, within BBR_RS13915at 902.094 kb on - strand, within BBR_RS13915at 902.105 kb on + strand, within BBR_RS13915at 902.115 kb on + strand, within BBR_RS13915at 902.122 kb on + strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.132 kb on + strand, within BBR_RS13915at 902.137 kb on + strand, within BBR_RS13915at 902.142 kb on + strand, within BBR_RS13915at 902.142 kb on + strand, within BBR_RS13915at 902.161 kb on + strand, within BBR_RS13915at 902.193 kb on - strand, within BBR_RS13915at 902.217 kb on + strand, within BBR_RS13915at 902.217 kb on + strand, within BBR_RS13915at 902.217 kb on + strand, within BBR_RS13915at 902.232 kb on + strand, within BBR_RS13915at 902.232 kb on + strand, within BBR_RS13915at 902.232 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.334 kb on - strand, within BBR_RS13915at 902.347 kb on + strand, within BBR_RS13915at 902.362 kb on + strand, within BBR_RS13915at 902.362 kb on + strand, within BBR_RS13915at 902.363 kb on + strand, within BBR_RS13915at 902.422 kb on + strandat 902.451 kb on + strandat 902.507 kb on + strandat 902.554 kb on - strandat 902.567 kb on + strandat 902.575 kb on - strandat 902.599 kb on - strandat 902.601 kb on + strandat 902.604 kb on - strandat 902.604 kb on - strandat 902.609 kb on - strandat 902.609 kb on - strandat 902.618 kb on + strandat 902.755 kb on + strandat 902.821 kb on + strandat 902.834 kb on - strandat 902.893 kb on + strandat 902.906 kb on - strandat 902.933 kb on - strandat 902.949 kb on + strandat 903.006 kb on + strand, within BBR_RS20805at 903.006 kb on + strand, within BBR_RS20805at 903.014 kb on - strand, within BBR_RS20805at 903.014 kb on - strand, within BBR_RS20805at 903.039 kb on - strand, within BBR_RS20805at 903.055 kb on + strand, within BBR_RS20805at 903.084 kb on + strand, within BBR_RS20805at 903.162 kb on - strand, within BBR_RS20805at 903.177 kb on + strand, within BBR_RS20805at 903.313 kb on - strand, within BBR_RS20805at 903.326 kb on - strand, within BBR_RS20805at 903.392 kb on + strand, within BBR_RS20805at 903.400 kb on - strand, within BBR_RS20805at 903.669 kb on + strand, within BBR_RS20805at 903.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse2; day3
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901,905 + BBR_RS13915 0.49 +0.3
901,905 + BBR_RS13915 0.49 +0.3
901,911 + BBR_RS13915 0.49 -1.4
901,919 - BBR_RS13915 0.50 -1.5
901,940 - BBR_RS13915 0.52 +0.7
901,998 - BBR_RS13915 0.56 -1.3
902,019 - BBR_RS13915 0.58 +1.3
902,021 + BBR_RS13915 0.58 +0.2
902,094 - BBR_RS13915 0.64 +0.7
902,105 + BBR_RS13915 0.65 -0.5
902,115 + BBR_RS13915 0.66 +0.6
902,122 + BBR_RS13915 0.66 -1.4
902,123 - BBR_RS13915 0.66 +1.6
902,123 - BBR_RS13915 0.66 -0.1
902,123 - BBR_RS13915 0.66 -1.0
902,123 - BBR_RS13915 0.66 +0.2
902,132 + BBR_RS13915 0.67 -1.3
902,137 + BBR_RS13915 0.68 +1.8
902,142 + BBR_RS13915 0.68 +0.1
902,142 + BBR_RS13915 0.68 -0.8
902,161 + BBR_RS13915 0.69 -0.9
902,193 - BBR_RS13915 0.72 -0.2
902,217 + BBR_RS13915 0.74 +0.6
902,217 + BBR_RS13915 0.74 +1.0
902,217 + BBR_RS13915 0.74 +0.4
902,232 + BBR_RS13915 0.75 -0.7
902,232 + BBR_RS13915 0.75 +1.6
902,232 + BBR_RS13915 0.75 +1.1
902,326 + BBR_RS13915 0.83 +0.4
902,326 + BBR_RS13915 0.83 -1.1
902,326 + BBR_RS13915 0.83 -1.3
902,326 + BBR_RS13915 0.83 +1.1
902,326 + BBR_RS13915 0.83 +1.1
902,334 - BBR_RS13915 0.83 -0.0
902,347 + BBR_RS13915 0.85 -0.6
902,362 + BBR_RS13915 0.86 +0.8
902,362 + BBR_RS13915 0.86 -0.3
902,363 + BBR_RS13915 0.86 +2.1
902,422 + +1.4
902,451 + +1.3
902,507 + +0.1
902,554 - +0.3
902,567 + +1.1
902,575 - -0.2
902,599 - -0.1
902,601 + -0.3
902,604 - +1.8
902,604 - -0.5
902,609 - -0.3
902,609 - +0.2
902,618 + -1.4
902,755 + -0.7
902,821 + -1.4
902,834 - +0.9
902,893 + +1.6
902,906 - +0.2
902,933 - +1.6
902,949 + +0.4
903,006 + BBR_RS20805 0.12 -1.0
903,006 + BBR_RS20805 0.12 -0.3
903,014 - BBR_RS20805 0.13 +0.1
903,014 - BBR_RS20805 0.13 +1.7
903,039 - BBR_RS20805 0.16 -1.4
903,055 + BBR_RS20805 0.18 -2.0
903,084 + BBR_RS20805 0.21 +1.7
903,162 - BBR_RS20805 0.30 -2.0
903,177 + BBR_RS20805 0.32 +1.3
903,313 - BBR_RS20805 0.48 +0.9
903,326 - BBR_RS20805 0.49 -0.3
903,392 + BBR_RS20805 0.57 -1.5
903,400 - BBR_RS20805 0.58 -0.0
903,669 + BBR_RS20805 0.89 -0.3
903,762 - +0.8

Or see this region's nucleotide sequence