Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13075 and BBR_RS13080 overlap by 8 nucleotides BBR_RS13080 and BBR_RS20745 overlap by 2 nucleotides BBR_RS20745 and BBR_RS13085 are separated by 37 nucleotides
BBR_RS13075: BBR_RS13075 - 23S rRNA pseudouridylate synthase, at 707,087 to 707,821
_RS13075
BBR_RS13080: BBR_RS13080 - LacI family DNA-binding transcriptional regulator, at 707,814 to 708,800
_RS13080
BBR_RS20745: BBR_RS20745 - hypothetical protein, at 708,799 to 709,002
_RS20745
BBR_RS13085: BBR_RS13085 - sugar ABC transporter permease, at 709,040 to 709,966
_RS13085
Position (kb) 708
709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 707.807 kb on + strand at 707.807 kb on - strand at 707.817 kb on + strand at 707.857 kb on - strand at 707.893 kb on - strand at 707.919 kb on - strand, within BBR_RS13080 at 707.919 kb on - strand, within BBR_RS13080 at 707.957 kb on + strand, within BBR_RS13080 at 707.983 kb on + strand, within BBR_RS13080 at 708.075 kb on - strand, within BBR_RS13080 at 708.075 kb on - strand, within BBR_RS13080 at 708.082 kb on - strand, within BBR_RS13080 at 708.107 kb on + strand, within BBR_RS13080 at 708.166 kb on + strand, within BBR_RS13080 at 708.167 kb on - strand, within BBR_RS13080 at 708.208 kb on + strand, within BBR_RS13080 at 708.239 kb on - strand, within BBR_RS13080 at 708.239 kb on - strand, within BBR_RS13080 at 708.239 kb on - strand, within BBR_RS13080 at 708.277 kb on + strand, within BBR_RS13080 at 708.279 kb on + strand, within BBR_RS13080 at 708.279 kb on + strand, within BBR_RS13080 at 708.287 kb on - strand, within BBR_RS13080 at 708.287 kb on - strand, within BBR_RS13080 at 708.456 kb on + strand, within BBR_RS13080 at 708.464 kb on - strand, within BBR_RS13080 at 708.495 kb on - strand, within BBR_RS13080 at 708.511 kb on + strand, within BBR_RS13080 at 708.511 kb on + strand, within BBR_RS13080 at 708.511 kb on - strand, within BBR_RS13080 at 708.554 kb on - strand, within BBR_RS13080 at 708.653 kb on - strand, within BBR_RS13080 at 708.676 kb on + strand, within BBR_RS13080 at 708.753 kb on + strand at 708.753 kb on + strand at 708.789 kb on - strand at 708.831 kb on - strand, within BBR_RS20745 at 708.934 kb on - strand, within BBR_RS20745 at 708.936 kb on - strand, within BBR_RS20745 at 708.961 kb on + strand, within BBR_RS20745 at 709.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse2; day3 remove 707,807 + +1.4 707,807 - -2.1 707,817 + -3.0 707,857 - +0.6 707,893 - -1.5 707,919 - BBR_RS13080 0.11 -1.9 707,919 - BBR_RS13080 0.11 -1.6 707,957 + BBR_RS13080 0.14 -1.1 707,983 + BBR_RS13080 0.17 -0.9 708,075 - BBR_RS13080 0.26 -1.2 708,075 - BBR_RS13080 0.26 -0.2 708,082 - BBR_RS13080 0.27 +1.7 708,107 + BBR_RS13080 0.30 +0.3 708,166 + BBR_RS13080 0.36 -2.3 708,167 - BBR_RS13080 0.36 -1.4 708,208 + BBR_RS13080 0.40 -0.9 708,239 - BBR_RS13080 0.43 -2.6 708,239 - BBR_RS13080 0.43 -0.7 708,239 - BBR_RS13080 0.43 -0.5 708,277 + BBR_RS13080 0.47 -1.0 708,279 + BBR_RS13080 0.47 -0.8 708,279 + BBR_RS13080 0.47 +0.2 708,287 - BBR_RS13080 0.48 -0.4 708,287 - BBR_RS13080 0.48 -0.3 708,456 + BBR_RS13080 0.65 -2.0 708,464 - BBR_RS13080 0.66 -1.3 708,495 - BBR_RS13080 0.69 -1.4 708,511 + BBR_RS13080 0.71 -0.1 708,511 + BBR_RS13080 0.71 -1.9 708,511 - BBR_RS13080 0.71 +1.7 708,554 - BBR_RS13080 0.75 -1.8 708,653 - BBR_RS13080 0.85 -1.1 708,676 + BBR_RS13080 0.87 -1.2 708,753 + +2.1 708,753 + -0.8 708,789 - -0.6 708,831 - BBR_RS20745 0.16 -2.1 708,934 - BBR_RS20745 0.66 -2.1 708,936 - BBR_RS20745 0.67 -0.7 708,961 + BBR_RS20745 0.79 -0.9 709,107 - +0.7
Or see this region's nucleotide sequence