Experiment: diet=StandardDiet; sample=FecalPellet; mouse2; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14055 and BBR_RS14060 are separated by 2 nucleotides BBR_RS14060 and BBR_RS14065 are separated by 142 nucleotides BBR_RS14065 and BBR_RS14070 are separated by 615 nucleotides
BBR_RS14055: BBR_RS14055 - ABC-2 transporter permease, at 928,736 to 929,449
_RS14055
BBR_RS14060: BBR_RS14060 - ABC transporter, at 929,452 to 930,165
_RS14060
BBR_RS14065: BBR_RS14065 - TnpV protein, at 930,308 to 930,681
_RS14065
BBR_RS14070: BBR_RS14070 - threonine synthase, at 931,297 to 932,787
_RS14070
Position (kb) 930
931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 929.310 kb on + strand, within BBR_RS14055 at 929.315 kb on + strand, within BBR_RS14055 at 929.323 kb on - strand, within BBR_RS14055 at 929.473 kb on + strand at 929.503 kb on + strand at 929.503 kb on + strand at 929.503 kb on + strand at 929.599 kb on + strand, within BBR_RS14060 at 929.599 kb on + strand, within BBR_RS14060 at 929.606 kb on + strand, within BBR_RS14060 at 929.606 kb on + strand, within BBR_RS14060 at 929.611 kb on + strand, within BBR_RS14060 at 929.611 kb on + strand, within BBR_RS14060 at 929.624 kb on - strand, within BBR_RS14060 at 929.633 kb on - strand, within BBR_RS14060 at 929.662 kb on - strand, within BBR_RS14060 at 929.669 kb on + strand, within BBR_RS14060 at 929.697 kb on + strand, within BBR_RS14060 at 929.697 kb on + strand, within BBR_RS14060 at 929.697 kb on + strand, within BBR_RS14060 at 929.697 kb on + strand, within BBR_RS14060 at 929.697 kb on + strand, within BBR_RS14060 at 929.697 kb on + strand, within BBR_RS14060 at 929.698 kb on - strand, within BBR_RS14060 at 929.705 kb on - strand, within BBR_RS14060 at 929.735 kb on + strand, within BBR_RS14060 at 929.735 kb on + strand, within BBR_RS14060 at 929.781 kb on + strand, within BBR_RS14060 at 929.781 kb on + strand, within BBR_RS14060 at 929.781 kb on + strand, within BBR_RS14060 at 929.781 kb on + strand, within BBR_RS14060 at 929.781 kb on + strand, within BBR_RS14060 at 929.781 kb on + strand, within BBR_RS14060 at 929.781 kb on + strand, within BBR_RS14060 at 929.850 kb on - strand, within BBR_RS14060 at 929.853 kb on + strand, within BBR_RS14060 at 929.854 kb on + strand, within BBR_RS14060 at 929.908 kb on - strand, within BBR_RS14060 at 929.921 kb on + strand, within BBR_RS14060 at 929.922 kb on - strand, within BBR_RS14060 at 929.924 kb on + strand, within BBR_RS14060 at 929.951 kb on - strand, within BBR_RS14060 at 930.127 kb on + strand at 930.134 kb on - strand at 930.135 kb on - strand at 930.166 kb on - strand at 930.208 kb on - strand at 930.219 kb on + strand at 930.259 kb on + strand at 930.264 kb on + strand at 930.266 kb on + strand at 930.328 kb on + strand at 930.328 kb on + strand at 930.337 kb on + strand at 930.339 kb on + strand at 930.345 kb on - strand at 930.345 kb on - strand at 930.365 kb on + strand, within BBR_RS14065 at 930.393 kb on + strand, within BBR_RS14065 at 930.606 kb on + strand, within BBR_RS14065 at 930.606 kb on + strand, within BBR_RS14065 at 930.633 kb on + strand, within BBR_RS14065 at 930.643 kb on + strand, within BBR_RS14065 at 930.662 kb on - strand at 930.666 kb on + strand at 930.666 kb on + strand at 930.700 kb on + strand at 930.700 kb on + strand at 930.700 kb on + strand at 930.757 kb on + strand at 930.850 kb on + strand at 930.855 kb on + strand at 930.912 kb on - strand at 930.913 kb on - strand at 930.913 kb on - strand at 930.913 kb on - strand at 930.913 kb on - strand at 930.926 kb on - strand at 930.949 kb on + strand at 930.957 kb on - strand at 930.957 kb on - strand at 931.034 kb on - strand at 931.051 kb on - strand at 931.061 kb on + strand at 931.069 kb on - strand at 931.075 kb on + strand at 931.083 kb on - strand at 931.083 kb on - strand at 931.093 kb on - strand at 931.142 kb on - strand at 931.175 kb on - strand at 931.255 kb on - strand at 931.279 kb on - strand at 931.292 kb on + strand at 931.292 kb on + strand at 931.294 kb on + strand at 931.294 kb on + strand at 931.302 kb on - strand at 931.302 kb on - strand at 931.327 kb on + strand at 931.327 kb on + strand at 931.337 kb on - strand at 931.337 kb on - strand at 931.527 kb on - strand, within BBR_RS14070 at 931.565 kb on - strand, within BBR_RS14070 at 931.652 kb on - strand, within BBR_RS14070 at 931.652 kb on - strand, within BBR_RS14070 at 931.653 kb on - strand, within BBR_RS14070
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse2; day3 remove 929,310 + BBR_RS14055 0.80 -1.7 929,315 + BBR_RS14055 0.81 +1.3 929,323 - BBR_RS14055 0.82 +0.7 929,473 + -0.3 929,503 + -1.8 929,503 + -1.9 929,503 + -1.8 929,599 + BBR_RS14060 0.21 -2.0 929,599 + BBR_RS14060 0.21 +0.1 929,606 + BBR_RS14060 0.22 -0.2 929,606 + BBR_RS14060 0.22 +0.0 929,611 + BBR_RS14060 0.22 +0.5 929,611 + BBR_RS14060 0.22 +0.2 929,624 - BBR_RS14060 0.24 +0.4 929,633 - BBR_RS14060 0.25 +0.1 929,662 - BBR_RS14060 0.29 -0.3 929,669 + BBR_RS14060 0.30 +2.0 929,697 + BBR_RS14060 0.34 -0.7 929,697 + BBR_RS14060 0.34 +0.2 929,697 + BBR_RS14060 0.34 -0.9 929,697 + BBR_RS14060 0.34 -1.7 929,697 + BBR_RS14060 0.34 +0.3 929,697 + BBR_RS14060 0.34 +1.0 929,698 - BBR_RS14060 0.34 -0.9 929,705 - BBR_RS14060 0.35 -1.6 929,735 + BBR_RS14060 0.40 +1.8 929,735 + BBR_RS14060 0.40 +1.3 929,781 + BBR_RS14060 0.46 -0.8 929,781 + BBR_RS14060 0.46 +1.6 929,781 + BBR_RS14060 0.46 -1.9 929,781 + BBR_RS14060 0.46 -0.8 929,781 + BBR_RS14060 0.46 +1.3 929,781 + BBR_RS14060 0.46 -1.1 929,781 + BBR_RS14060 0.46 +0.6 929,850 - BBR_RS14060 0.56 -1.2 929,853 + BBR_RS14060 0.56 +1.3 929,854 + BBR_RS14060 0.56 +0.3 929,908 - BBR_RS14060 0.64 +0.4 929,921 + BBR_RS14060 0.66 +0.6 929,922 - BBR_RS14060 0.66 -0.8 929,924 + BBR_RS14060 0.66 -2.1 929,951 - BBR_RS14060 0.70 -1.4 930,127 + +0.1 930,134 - -1.1 930,135 - -0.2 930,166 - -0.7 930,208 - -1.0 930,219 + -0.5 930,259 + +0.8 930,264 + -0.1 930,266 + +0.7 930,328 + +1.9 930,328 + -1.4 930,337 + +0.0 930,339 + -1.2 930,345 - -0.4 930,345 - +0.4 930,365 + BBR_RS14065 0.15 -0.6 930,393 + BBR_RS14065 0.23 -1.2 930,606 + BBR_RS14065 0.80 -0.5 930,606 + BBR_RS14065 0.80 -2.7 930,633 + BBR_RS14065 0.87 -0.1 930,643 + BBR_RS14065 0.90 -0.7 930,662 - -0.8 930,666 + -1.0 930,666 + +0.9 930,700 + -1.0 930,700 + +0.8 930,700 + -1.0 930,757 + -1.8 930,850 + -1.2 930,855 + +0.2 930,912 - -1.4 930,913 - +0.3 930,913 - -0.4 930,913 - -0.0 930,913 - +2.3 930,926 - -1.1 930,949 + +1.3 930,957 - +0.5 930,957 - -0.4 931,034 - +0.1 931,051 - +1.0 931,061 + +0.0 931,069 - -0.8 931,075 + -0.2 931,083 - -0.6 931,083 - -0.3 931,093 - +1.2 931,142 - -2.2 931,175 - -0.2 931,255 - +1.1 931,279 - -0.8 931,292 + +1.0 931,292 + -1.8 931,294 + -0.1 931,294 + +0.1 931,302 - -1.4 931,302 - +1.7 931,327 + +0.9 931,327 + -0.6 931,337 - -0.1 931,337 - +0.8 931,527 - BBR_RS14070 0.15 +1.5 931,565 - BBR_RS14070 0.18 +0.8 931,652 - BBR_RS14070 0.24 -1.1 931,652 - BBR_RS14070 0.24 +1.6 931,653 - BBR_RS14070 0.24 -1.2
Or see this region's nucleotide sequence