Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0946 and DVU0947 are separated by 55 nucleotides DVU0947 and DVU0948 are separated by 175 nucleotides DVU0948 and DVU0949 are separated by 47 nucleotides
DVU0946: DVU0946 - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 1,039,992 to 1,041,422
DVU0946
DVU0947: DVU0947 - membrane protein, putative (TIGR), at 1,041,478 to 1,042,383
DVU0947
DVU0948: DVU0948 - conserved hypothetical protein (TIGR), at 1,042,559 to 1,042,987
DVU0948
DVU0949: DVU0949 - conserved domain protein (TIGR), at 1,043,035 to 1,043,796
DVU0949
Position (kb)
1041
1042
1043 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1040.656 kb on - strand, within DVU0946 at 1040.656 kb on - strand, within DVU0946 at 1040.660 kb on + strand, within DVU0946 at 1040.785 kb on + strand, within DVU0946 at 1041.023 kb on + strand, within DVU0946 at 1041.151 kb on + strand, within DVU0946 at 1041.324 kb on - strand at 1041.473 kb on + strand at 1041.625 kb on - strand, within DVU0947 at 1041.665 kb on + strand, within DVU0947 at 1041.704 kb on + strand, within DVU0947 at 1041.714 kb on - strand, within DVU0947 at 1041.714 kb on - strand, within DVU0947 at 1041.716 kb on + strand, within DVU0947 at 1041.734 kb on - strand, within DVU0947 at 1041.772 kb on - strand, within DVU0947 at 1041.863 kb on + strand, within DVU0947 at 1041.869 kb on - strand, within DVU0947 at 1041.972 kb on - strand, within DVU0947 at 1042.006 kb on + strand, within DVU0947 at 1042.011 kb on + strand, within DVU0947 at 1042.272 kb on - strand, within DVU0947 at 1042.286 kb on + strand, within DVU0947 at 1042.296 kb on - strand at 1042.431 kb on + strand at 1042.512 kb on + strand at 1042.556 kb on - strand at 1042.564 kb on + strand at 1042.706 kb on + strand, within DVU0948 at 1042.723 kb on + strand, within DVU0948 at 1042.782 kb on + strand, within DVU0948 at 1042.788 kb on + strand, within DVU0948 at 1042.866 kb on - strand, within DVU0948 at 1042.871 kb on - strand, within DVU0948 at 1042.878 kb on - strand, within DVU0948 at 1042.952 kb on - strand at 1043.032 kb on + strand at 1043.047 kb on + strand at 1043.047 kb on + strand at 1043.117 kb on - strand, within DVU0949 at 1043.185 kb on - strand, within DVU0949 at 1043.246 kb on + strand, within DVU0949 at 1043.278 kb on - strand, within DVU0949 at 1043.367 kb on - strand, within DVU0949
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 1,040,656 - DVU0946 0.46 +1.3 1,040,656 - DVU0946 0.46 -1.4 1,040,660 + DVU0946 0.47 -1.4 1,040,785 + DVU0946 0.55 +0.1 1,041,023 + DVU0946 0.72 +0.6 1,041,151 + DVU0946 0.81 -1.7 1,041,324 - -0.3 1,041,473 + -0.2 1,041,625 - DVU0947 0.16 -1.4 1,041,665 + DVU0947 0.21 +0.0 1,041,704 + DVU0947 0.25 +0.1 1,041,714 - DVU0947 0.26 -2.7 1,041,714 - DVU0947 0.26 +0.0 1,041,716 + DVU0947 0.26 +0.2 1,041,734 - DVU0947 0.28 +1.0 1,041,772 - DVU0947 0.32 -0.8 1,041,863 + DVU0947 0.42 -1.0 1,041,869 - DVU0947 0.43 -0.9 1,041,972 - DVU0947 0.55 +0.0 1,042,006 + DVU0947 0.58 -0.4 1,042,011 + DVU0947 0.59 +0.1 1,042,272 - DVU0947 0.88 -0.1 1,042,286 + DVU0947 0.89 +1.6 1,042,296 - +1.1 1,042,431 + -0.3 1,042,512 + +2.3 1,042,556 - -0.0 1,042,564 + +0.5 1,042,706 + DVU0948 0.34 -0.1 1,042,723 + DVU0948 0.38 -0.5 1,042,782 + DVU0948 0.52 -0.9 1,042,788 + DVU0948 0.53 +0.5 1,042,866 - DVU0948 0.72 -0.7 1,042,871 - DVU0948 0.73 -0.5 1,042,878 - DVU0948 0.74 +0.9 1,042,952 - +0.2 1,043,032 + -0.4 1,043,047 + +0.1 1,043,047 + +0.1 1,043,117 - DVU0949 0.11 -0.6 1,043,185 - DVU0949 0.20 +0.9 1,043,246 + DVU0949 0.28 -0.0 1,043,278 - DVU0949 0.32 +0.1 1,043,367 - DVU0949 0.44 -0.8
Or see this region's nucleotide sequence