Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0065

Experiment: Biofilm in WT Conditioned Media in Test Tubes with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0063 and Synpcc7942_0064 overlap by 4 nucleotidesSynpcc7942_0064 and infC are separated by 116 nucleotidesinfC and Synpcc7942_0066 are separated by 116 nucleotides Synpcc7942_0063: Synpcc7942_0063 - dual specificity protein phosphatase, at 64,266 to 64,706 _0063 Synpcc7942_0064: Synpcc7942_0064 - hypothetical protein, at 64,703 to 64,870 _0064 Synpcc7942_0065: infC - translation initiation factor IF-3, at 64,987 to 65,541 infC Synpcc7942_0066: Synpcc7942_0066 - hypothetical protein, at 65,658 to 67,172 _0066 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 63.989 kb on - strandat 63.991 kb on - strandat 63.994 kb on - strandat 63.994 kb on - strandat 63.994 kb on - strandat 63.994 kb on - strandat 63.996 kb on + strandat 63.996 kb on + strandat 64.004 kb on - strandat 64.004 kb on - strandat 64.010 kb on + strandat 64.018 kb on - strandat 64.025 kb on + strandat 64.038 kb on - strandat 64.079 kb on + strandat 64.085 kb on - strandat 64.087 kb on - strandat 64.106 kb on + strandat 64.160 kb on + strandat 64.168 kb on - strandat 64.168 kb on - strandat 64.171 kb on + strandat 64.179 kb on - strandat 64.193 kb on - strandat 64.193 kb on - strandat 64.193 kb on - strandat 64.196 kb on + strandat 64.196 kb on + strandat 64.244 kb on - strandat 64.244 kb on - strandat 64.253 kb on + strandat 64.261 kb on - strandat 64.261 kb on - strandat 64.263 kb on + strandat 64.272 kb on - strandat 64.291 kb on + strandat 64.296 kb on - strandat 64.359 kb on + strand, within Synpcc7942_0063at 64.413 kb on + strand, within Synpcc7942_0063at 64.421 kb on - strand, within Synpcc7942_0063at 64.450 kb on + strand, within Synpcc7942_0063at 64.452 kb on + strand, within Synpcc7942_0063at 64.458 kb on - strand, within Synpcc7942_0063at 64.487 kb on - strand, within Synpcc7942_0063at 64.490 kb on + strand, within Synpcc7942_0063at 64.501 kb on + strand, within Synpcc7942_0063at 64.511 kb on + strand, within Synpcc7942_0063at 64.516 kb on + strand, within Synpcc7942_0063at 64.524 kb on - strand, within Synpcc7942_0063at 64.524 kb on - strand, within Synpcc7942_0063at 64.599 kb on + strand, within Synpcc7942_0063at 64.599 kb on + strand, within Synpcc7942_0063at 64.607 kb on - strand, within Synpcc7942_0063at 64.607 kb on - strand, within Synpcc7942_0063at 64.607 kb on - strand, within Synpcc7942_0063at 64.607 kb on - strand, within Synpcc7942_0063at 64.607 kb on - strand, within Synpcc7942_0063at 64.609 kb on + strand, within Synpcc7942_0063at 64.625 kb on - strand, within Synpcc7942_0063at 64.710 kb on + strandat 64.722 kb on - strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.724 kb on + strand, within Synpcc7942_0064at 64.732 kb on - strand, within Synpcc7942_0064at 64.732 kb on - strand, within Synpcc7942_0064at 64.734 kb on + strand, within Synpcc7942_0064at 64.734 kb on - strand, within Synpcc7942_0064at 64.783 kb on - strand, within Synpcc7942_0064at 65.691 kb on + strandat 65.700 kb on + strandat 65.708 kb on - strandat 65.731 kb on - strandat 65.761 kb on + strandat 65.847 kb on + strand, within Synpcc7942_0066at 65.863 kb on + strand, within Synpcc7942_0066at 65.871 kb on - strand, within Synpcc7942_0066at 65.871 kb on - strand, within Synpcc7942_0066at 65.871 kb on - strandat 65.871 kb on - strand, within Synpcc7942_0066at 65.871 kb on - strand, within Synpcc7942_0066at 65.952 kb on - strand, within Synpcc7942_0066at 65.969 kb on + strand, within Synpcc7942_0066at 65.969 kb on + strand, within Synpcc7942_0066at 65.970 kb on + strand, within Synpcc7942_0066at 65.977 kb on - strand, within Synpcc7942_0066at 65.999 kb on + strand, within Synpcc7942_0066at 66.007 kb on - strand, within Synpcc7942_0066at 66.018 kb on + strand, within Synpcc7942_0066at 66.023 kb on + strand, within Synpcc7942_0066at 66.040 kb on - strand, within Synpcc7942_0066at 66.075 kb on + strand, within Synpcc7942_0066at 66.149 kb on - strand, within Synpcc7942_0066at 66.168 kb on + strand, within Synpcc7942_0066at 66.174 kb on + strand, within Synpcc7942_0066at 66.182 kb on - strand, within Synpcc7942_0066at 66.182 kb on - strand, within Synpcc7942_0066at 66.209 kb on + strand, within Synpcc7942_0066at 66.224 kb on + strand, within Synpcc7942_0066at 66.225 kb on - strand, within Synpcc7942_0066at 66.253 kb on + strand, within Synpcc7942_0066at 66.258 kb on + strand, within Synpcc7942_0066at 66.260 kb on - strand, within Synpcc7942_0066at 66.261 kb on - strand, within Synpcc7942_0066at 66.266 kb on - strand, within Synpcc7942_0066at 66.272 kb on + strand, within Synpcc7942_0066at 66.280 kb on - strand, within Synpcc7942_0066at 66.280 kb on - strand, within Synpcc7942_0066at 66.280 kb on - strand, within Synpcc7942_0066at 66.308 kb on + strand, within Synpcc7942_0066at 66.308 kb on - strand, within Synpcc7942_0066at 66.316 kb on - strand, within Synpcc7942_0066at 66.339 kb on + strand, within Synpcc7942_0066at 66.378 kb on - strand, within Synpcc7942_0066at 66.382 kb on - strand, within Synpcc7942_0066at 66.387 kb on - strand, within Synpcc7942_0066at 66.393 kb on + strand, within Synpcc7942_0066at 66.405 kb on + strand, within Synpcc7942_0066at 66.425 kb on + strand, within Synpcc7942_0066at 66.433 kb on - strandat 66.435 kb on + strand, within Synpcc7942_0066at 66.458 kb on + strand, within Synpcc7942_0066at 66.466 kb on + strand, within Synpcc7942_0066at 66.466 kb on + strand, within Synpcc7942_0066at 66.466 kb on + strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.474 kb on - strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066at 66.541 kb on + strand, within Synpcc7942_0066

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm in WT Conditioned Media in Test Tubes with Spin rep 1
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63,989 - +0.4
63,991 - -0.1
63,994 - +0.3
63,994 - -0.5
63,994 - -0.8
63,994 - -0.1
63,996 + -1.7
63,996 + -0.6
64,004 - +0.4
64,004 - -2.1
64,010 + +0.4
64,018 - -1.3
64,025 + -0.4
64,038 - -1.6
64,079 + +0.9
64,085 - -1.4
64,087 - +0.9
64,106 + +0.9
64,160 + -0.8
64,168 - -0.8
64,168 - -0.9
64,171 + +2.6
64,179 - +0.9
64,193 - -1.2
64,193 - +0.6
64,193 - -1.1
64,196 + -1.7
64,196 + -0.6
64,244 - +0.4
64,244 - -2.1
64,253 + -2.1
64,261 - -0.6
64,261 - -1.7
64,263 + -1.9
64,272 - -0.7
64,291 + -1.1
64,296 - -1.6
64,359 + Synpcc7942_0063 0.21 +0.9
64,413 + Synpcc7942_0063 0.33 -1.9
64,421 - Synpcc7942_0063 0.35 -0.1
64,450 + Synpcc7942_0063 0.42 +0.9
64,452 + Synpcc7942_0063 0.42 -1.5
64,458 - Synpcc7942_0063 0.44 -1.0
64,487 - Synpcc7942_0063 0.50 -1.9
64,490 + Synpcc7942_0063 0.51 +1.9
64,501 + Synpcc7942_0063 0.53 -2.4
64,511 + Synpcc7942_0063 0.56 -0.9
64,516 + Synpcc7942_0063 0.57 -0.3
64,524 - Synpcc7942_0063 0.59 -1.1
64,524 - Synpcc7942_0063 0.59 -1.4
64,599 + Synpcc7942_0063 0.76 -0.1
64,599 + Synpcc7942_0063 0.76 +1.9
64,607 - Synpcc7942_0063 0.77 -2.0
64,607 - Synpcc7942_0063 0.77 -0.8
64,607 - Synpcc7942_0063 0.77 -1.9
64,607 - Synpcc7942_0063 0.77 -0.4
64,607 - Synpcc7942_0063 0.77 -0.3
64,609 + Synpcc7942_0063 0.78 -0.8
64,625 - Synpcc7942_0063 0.81 -1.3
64,710 + -2.9
64,722 - Synpcc7942_0064 0.11 +1.9
64,724 + Synpcc7942_0064 0.12 -0.1
64,724 + Synpcc7942_0064 0.12 -0.3
64,724 + Synpcc7942_0064 0.12 +3.8
64,724 + Synpcc7942_0064 0.12 +0.4
64,724 + Synpcc7942_0064 0.12 +0.9
64,732 - Synpcc7942_0064 0.17 -0.1
64,732 - Synpcc7942_0064 0.17 +0.6
64,734 + Synpcc7942_0064 0.18 +2.3
64,734 - Synpcc7942_0064 0.18 -0.8
64,783 - Synpcc7942_0064 0.48 +3.5
65,691 + +0.7
65,700 + -0.9
65,708 - -0.9
65,731 - -1.4
65,761 + +0.9
65,847 + Synpcc7942_0066 0.12 -0.1
65,863 + Synpcc7942_0066 0.14 -0.5
65,871 - Synpcc7942_0066 0.14 +0.9
65,871 - Synpcc7942_0066 0.14 -2.4
65,871 - +0.2
65,871 - Synpcc7942_0066 0.14 +2.5
65,871 - Synpcc7942_0066 0.14 -0.8
65,952 - Synpcc7942_0066 0.19 -1.0
65,969 + Synpcc7942_0066 0.21 -0.4
65,969 + Synpcc7942_0066 0.21 -1.1
65,970 + Synpcc7942_0066 0.21 -0.8
65,977 - Synpcc7942_0066 0.21 -1.3
65,999 + Synpcc7942_0066 0.23 -0.6
66,007 - Synpcc7942_0066 0.23 +2.3
66,018 + Synpcc7942_0066 0.24 -1.1
66,023 + Synpcc7942_0066 0.24 -2.2
66,040 - Synpcc7942_0066 0.25 -0.1
66,075 + Synpcc7942_0066 0.28 -0.1
66,149 - Synpcc7942_0066 0.32 -0.9
66,168 + Synpcc7942_0066 0.34 -0.8
66,174 + Synpcc7942_0066 0.34 -1.8
66,182 - Synpcc7942_0066 0.35 -0.5
66,182 - Synpcc7942_0066 0.35 -1.9
66,209 + Synpcc7942_0066 0.36 +1.7
66,224 + Synpcc7942_0066 0.37 -1.2
66,225 - Synpcc7942_0066 0.37 +2.9
66,253 + Synpcc7942_0066 0.39 +1.4
66,258 + Synpcc7942_0066 0.40 -1.1
66,260 - Synpcc7942_0066 0.40 -1.9
66,261 - Synpcc7942_0066 0.40 -0.6
66,266 - Synpcc7942_0066 0.40 -1.7
66,272 + Synpcc7942_0066 0.41 -0.5
66,280 - Synpcc7942_0066 0.41 -0.5
66,280 - Synpcc7942_0066 0.41 -1.2
66,280 - Synpcc7942_0066 0.41 +2.5
66,308 + Synpcc7942_0066 0.43 -0.7
66,308 - Synpcc7942_0066 0.43 +0.2
66,316 - Synpcc7942_0066 0.43 -0.1
66,339 + Synpcc7942_0066 0.45 -1.5
66,378 - Synpcc7942_0066 0.48 +0.5
66,382 - Synpcc7942_0066 0.48 +0.9
66,387 - Synpcc7942_0066 0.48 -1.8
66,393 + Synpcc7942_0066 0.49 -0.4
66,405 + Synpcc7942_0066 0.49 -0.5
66,425 + Synpcc7942_0066 0.51 -0.7
66,433 - -1.4
66,435 + Synpcc7942_0066 0.51 -0.8
66,458 + Synpcc7942_0066 0.53 -0.6
66,466 + Synpcc7942_0066 0.53 -0.6
66,466 + Synpcc7942_0066 0.53 +0.8
66,466 + Synpcc7942_0066 0.53 +0.5
66,474 - Synpcc7942_0066 0.54 +0.9
66,474 - Synpcc7942_0066 0.54 -1.2
66,474 - Synpcc7942_0066 0.54 -0.2
66,474 - Synpcc7942_0066 0.54 -2.6
66,474 - Synpcc7942_0066 0.54 +0.9
66,474 - Synpcc7942_0066 0.54 -2.2
66,541 + Synpcc7942_0066 0.58 -1.8
66,541 + Synpcc7942_0066 0.58 -2.0
66,541 + Synpcc7942_0066 0.58 +2.5
66,541 + Synpcc7942_0066 0.58 -1.9
66,541 + Synpcc7942_0066 0.58 +2.5

Or see this region's nucleotide sequence