Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05850

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05849 and H281DRAFT_05850 are separated by 172 nucleotidesH281DRAFT_05850 and H281DRAFT_05851 are separated by 84 nucleotidesH281DRAFT_05851 and H281DRAFT_05852 are separated by 238 nucleotides H281DRAFT_05849: H281DRAFT_05849 - 4-hydroxyphenylpyruvate dioxygenase, at 129,644 to 130,741 _05849 H281DRAFT_05850: H281DRAFT_05850 - transcriptional regulator, AsnC family, at 130,914 to 131,411 _05850 H281DRAFT_05851: H281DRAFT_05851 - Protein N-acetyltransferase, RimJ/RimL family, at 131,496 to 132,164 _05851 H281DRAFT_05852: H281DRAFT_05852 - transcriptional regulator, TetR family, at 132,403 to 133,014 _05852 Position (kb) 130 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 129.961 kb on - strand, within H281DRAFT_05849at 129.961 kb on - strand, within H281DRAFT_05849at 130.063 kb on + strand, within H281DRAFT_05849at 130.063 kb on + strand, within H281DRAFT_05849at 130.064 kb on - strand, within H281DRAFT_05849at 130.119 kb on - strand, within H281DRAFT_05849at 130.140 kb on + strand, within H281DRAFT_05849at 130.141 kb on - strand, within H281DRAFT_05849at 130.141 kb on - strand, within H281DRAFT_05849at 130.174 kb on - strand, within H281DRAFT_05849at 130.232 kb on - strand, within H281DRAFT_05849at 130.233 kb on + strand, within H281DRAFT_05849at 130.233 kb on + strand, within H281DRAFT_05849at 130.233 kb on + strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.296 kb on + strand, within H281DRAFT_05849at 130.296 kb on + strand, within H281DRAFT_05849at 130.297 kb on - strand, within H281DRAFT_05849at 130.297 kb on - strand, within H281DRAFT_05849at 130.301 kb on - strand, within H281DRAFT_05849at 130.362 kb on + strand, within H281DRAFT_05849at 130.362 kb on + strand, within H281DRAFT_05849at 130.573 kb on + strand, within H281DRAFT_05849at 130.573 kb on + strand, within H281DRAFT_05849at 130.574 kb on - strand, within H281DRAFT_05849at 130.592 kb on + strand, within H281DRAFT_05849at 130.592 kb on + strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strand, within H281DRAFT_05849at 130.593 kb on - strandat 130.593 kb on - strand, within H281DRAFT_05849at 130.606 kb on + strand, within H281DRAFT_05849at 130.606 kb on + strand, within H281DRAFT_05849at 130.683 kb on + strandat 130.884 kb on + strandat 130.924 kb on + strandat 130.930 kb on + strandat 130.949 kb on + strandat 131.041 kb on + strand, within H281DRAFT_05850at 131.076 kb on + strand, within H281DRAFT_05850at 131.077 kb on - strand, within H281DRAFT_05850at 131.124 kb on + strand, within H281DRAFT_05850at 131.124 kb on + strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.125 kb on - strand, within H281DRAFT_05850at 131.246 kb on + strand, within H281DRAFT_05850at 131.246 kb on + strand, within H281DRAFT_05850at 131.247 kb on - strand, within H281DRAFT_05850at 131.247 kb on - strand, within H281DRAFT_05850at 131.265 kb on + strand, within H281DRAFT_05850at 131.266 kb on - strand, within H281DRAFT_05850at 131.266 kb on - strand, within H281DRAFT_05850at 131.266 kb on - strand, within H281DRAFT_05850at 131.278 kb on + strand, within H281DRAFT_05850at 131.279 kb on - strand, within H281DRAFT_05850at 131.570 kb on - strand, within H281DRAFT_05851at 131.645 kb on - strand, within H281DRAFT_05851at 131.737 kb on + strand, within H281DRAFT_05851at 131.737 kb on + strand, within H281DRAFT_05851at 131.737 kb on + strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.738 kb on - strand, within H281DRAFT_05851at 131.801 kb on + strand, within H281DRAFT_05851at 131.929 kb on - strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.962 kb on + strand, within H281DRAFT_05851at 131.963 kb on - strand, within H281DRAFT_05851at 132.025 kb on - strand, within H281DRAFT_05851at 132.025 kb on - strand, within H281DRAFT_05851at 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.153 kb on - strandat 132.153 kb on - strandat 132.153 kb on - strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.399 kb on + strandat 132.400 kb on - strandat 132.400 kb on - strandat 132.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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129,961 - H281DRAFT_05849 0.29 -0.4
129,961 - H281DRAFT_05849 0.29 -0.7
130,063 + H281DRAFT_05849 0.38 -0.1
130,063 + H281DRAFT_05849 0.38 -1.3
130,064 - H281DRAFT_05849 0.38 +1.1
130,119 - H281DRAFT_05849 0.43 -1.4
130,140 + H281DRAFT_05849 0.45 +0.0
130,141 - H281DRAFT_05849 0.45 -0.6
130,141 - H281DRAFT_05849 0.45 +1.4
130,174 - H281DRAFT_05849 0.48 +0.3
130,232 - H281DRAFT_05849 0.54 +1.1
130,233 + H281DRAFT_05849 0.54 +1.7
130,233 + H281DRAFT_05849 0.54 -1.0
130,233 + H281DRAFT_05849 0.54 +1.4
130,234 - H281DRAFT_05849 0.54 +0.6
130,234 - H281DRAFT_05849 0.54 -0.9
130,234 - H281DRAFT_05849 0.54 +0.0
130,234 - H281DRAFT_05849 0.54 +2.1
130,234 - H281DRAFT_05849 0.54 -0.3
130,234 - H281DRAFT_05849 0.54 -0.8
130,296 + H281DRAFT_05849 0.59 +0.5
130,296 + H281DRAFT_05849 0.59 +1.3
130,297 - H281DRAFT_05849 0.59 -0.6
130,297 - H281DRAFT_05849 0.59 -0.6
130,301 - H281DRAFT_05849 0.60 +0.3
130,362 + H281DRAFT_05849 0.65 -0.1
130,362 + H281DRAFT_05849 0.65 -2.1
130,573 + H281DRAFT_05849 0.85 -0.3
130,573 + H281DRAFT_05849 0.85 +1.1
130,574 - H281DRAFT_05849 0.85 -0.5
130,592 + H281DRAFT_05849 0.86 +0.3
130,592 + H281DRAFT_05849 0.86 -0.3
130,593 - H281DRAFT_05849 0.86 +0.4
130,593 - H281DRAFT_05849 0.86 -1.8
130,593 - H281DRAFT_05849 0.86 -0.6
130,593 - H281DRAFT_05849 0.86 -1.1
130,593 - H281DRAFT_05849 0.86 -1.1
130,593 - H281DRAFT_05849 0.86 +0.6
130,593 - H281DRAFT_05849 0.86 -0.8
130,593 - -0.0
130,593 - H281DRAFT_05849 0.86 -1.1
130,606 + H281DRAFT_05849 0.88 -0.5
130,606 + H281DRAFT_05849 0.88 +1.3
130,683 + -3.3
130,884 + +0.5
130,924 + -0.2
130,930 + -0.6
130,949 + +1.1
131,041 + H281DRAFT_05850 0.26 -0.2
131,076 + H281DRAFT_05850 0.33 +0.0
131,077 - H281DRAFT_05850 0.33 +1.1
131,124 + H281DRAFT_05850 0.42 -0.9
131,124 + H281DRAFT_05850 0.42 +0.3
131,125 - H281DRAFT_05850 0.42 -0.1
131,125 - H281DRAFT_05850 0.42 +0.1
131,125 - H281DRAFT_05850 0.42 +1.1
131,125 - H281DRAFT_05850 0.42 +0.2
131,125 - H281DRAFT_05850 0.42 +0.5
131,125 - H281DRAFT_05850 0.42 -1.7
131,246 + H281DRAFT_05850 0.67 -0.7
131,246 + H281DRAFT_05850 0.67 -0.8
131,247 - H281DRAFT_05850 0.67 -2.5
131,247 - H281DRAFT_05850 0.67 -0.0
131,265 + H281DRAFT_05850 0.70 +2.1
131,266 - H281DRAFT_05850 0.71 +0.6
131,266 - H281DRAFT_05850 0.71 +0.6
131,266 - H281DRAFT_05850 0.71 +0.8
131,278 + H281DRAFT_05850 0.73 +0.5
131,279 - H281DRAFT_05850 0.73 +0.1
131,570 - H281DRAFT_05851 0.11 +0.4
131,645 - H281DRAFT_05851 0.22 -0.1
131,737 + H281DRAFT_05851 0.36 -0.0
131,737 + H281DRAFT_05851 0.36 -1.0
131,737 + H281DRAFT_05851 0.36 -2.0
131,738 - H281DRAFT_05851 0.36 -0.3
131,738 - H281DRAFT_05851 0.36 -0.4
131,738 - H281DRAFT_05851 0.36 -0.5
131,738 - H281DRAFT_05851 0.36 -2.3
131,738 - H281DRAFT_05851 0.36 +0.9
131,738 - H281DRAFT_05851 0.36 -0.0
131,738 - H281DRAFT_05851 0.36 -1.2
131,738 - H281DRAFT_05851 0.36 +0.4
131,738 - H281DRAFT_05851 0.36 +0.5
131,801 + H281DRAFT_05851 0.46 +1.0
131,929 - H281DRAFT_05851 0.65 -0.6
131,962 + H281DRAFT_05851 0.70 -1.8
131,962 + H281DRAFT_05851 0.70 -0.3
131,962 + H281DRAFT_05851 0.70 +1.4
131,962 + H281DRAFT_05851 0.70 -0.6
131,962 + H281DRAFT_05851 0.70 +0.6
131,963 - H281DRAFT_05851 0.70 +0.1
132,025 - H281DRAFT_05851 0.79 -1.4
132,025 - H281DRAFT_05851 0.79 -1.3
132,152 + -0.4
132,152 + -0.8
132,152 + +0.6
132,152 + -1.6
132,152 + +2.4
132,152 + +2.0
132,153 - -0.3
132,153 - -0.0
132,153 - -1.9
132,399 + +0.2
132,399 + +0.1
132,399 + -0.8
132,399 + -1.8
132,400 - -1.0
132,400 - -1.4
132,400 - -1.0

Or see this region's nucleotide sequence