Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05702

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05701 and H281DRAFT_05702 are separated by 95 nucleotidesH281DRAFT_05702 and H281DRAFT_05703 overlap by 4 nucleotides H281DRAFT_05701: H281DRAFT_05701 - glycerol 3-phosphate ABC transporter ATP-binding protein, at 118,364 to 119,452 _05701 H281DRAFT_05702: H281DRAFT_05702 - glycerol 3-phosphate ABC transporter membrane protein, at 119,548 to 120,393 _05702 H281DRAFT_05703: H281DRAFT_05703 - glycerol 3-phosphate ABC transporter membrane protein /carbohydrate ABC transporter membrane protein 1, CUT1 family, at 120,390 to 121,274 _05703 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 118.555 kb on + strand, within H281DRAFT_05701at 118.555 kb on + strand, within H281DRAFT_05701at 118.556 kb on - strand, within H281DRAFT_05701at 119.158 kb on - strand, within H281DRAFT_05701at 119.182 kb on + strand, within H281DRAFT_05701at 119.191 kb on - strand, within H281DRAFT_05701at 119.200 kb on - strand, within H281DRAFT_05701at 119.200 kb on - strand, within H281DRAFT_05701at 119.751 kb on - strand, within H281DRAFT_05702at 119.960 kb on + strand, within H281DRAFT_05702at 119.960 kb on + strandat 119.960 kb on + strand, within H281DRAFT_05702at 119.960 kb on + strand, within H281DRAFT_05702at 119.961 kb on - strand, within H281DRAFT_05702at 119.961 kb on - strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.964 kb on + strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 119.965 kb on - strand, within H281DRAFT_05702at 120.220 kb on - strand, within H281DRAFT_05702at 120.344 kb on - strandat 120.526 kb on + strand, within H281DRAFT_05703at 120.526 kb on + strand, within H281DRAFT_05703at 120.604 kb on + strand, within H281DRAFT_05703at 120.604 kb on + strand, within H281DRAFT_05703at 120.604 kb on + strand, within H281DRAFT_05703at 120.745 kb on + strand, within H281DRAFT_05703at 120.745 kb on + strand, within H281DRAFT_05703at 120.746 kb on - strand, within H281DRAFT_05703at 120.764 kb on - strand, within H281DRAFT_05703at 120.764 kb on - strand, within H281DRAFT_05703at 120.764 kb on - strandat 120.848 kb on - strand, within H281DRAFT_05703at 120.934 kb on + strand, within H281DRAFT_05703at 120.934 kb on + strand, within H281DRAFT_05703at 120.935 kb on - strand, within H281DRAFT_05703at 121.075 kb on + strand, within H281DRAFT_05703at 121.234 kb on + strandat 121.235 kb on - strandat 121.343 kb on + strandat 121.344 kb on - strandat 121.351 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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118,555 + H281DRAFT_05701 0.18 +1.2
118,555 + H281DRAFT_05701 0.18 +0.7
118,556 - H281DRAFT_05701 0.18 +1.7
119,158 - H281DRAFT_05701 0.73 +1.4
119,182 + H281DRAFT_05701 0.75 -0.7
119,191 - H281DRAFT_05701 0.76 +0.0
119,200 - H281DRAFT_05701 0.77 -0.3
119,200 - H281DRAFT_05701 0.77 -1.0
119,751 - H281DRAFT_05702 0.24 +0.7
119,960 + H281DRAFT_05702 0.49 -1.2
119,960 + +2.0
119,960 + H281DRAFT_05702 0.49 +0.7
119,960 + H281DRAFT_05702 0.49 +0.1
119,961 - H281DRAFT_05702 0.49 +0.6
119,961 - H281DRAFT_05702 0.49 +0.6
119,964 + H281DRAFT_05702 0.49 +0.8
119,964 + H281DRAFT_05702 0.49 -0.7
119,964 + H281DRAFT_05702 0.49 -1.6
119,964 + H281DRAFT_05702 0.49 +0.7
119,965 - H281DRAFT_05702 0.49 -0.3
119,965 - H281DRAFT_05702 0.49 +1.0
119,965 - H281DRAFT_05702 0.49 -0.3
119,965 - H281DRAFT_05702 0.49 +1.2
119,965 - H281DRAFT_05702 0.49 -0.2
120,220 - H281DRAFT_05702 0.79 -0.3
120,344 - -1.9
120,526 + H281DRAFT_05703 0.15 -0.9
120,526 + H281DRAFT_05703 0.15 +0.4
120,604 + H281DRAFT_05703 0.24 -1.4
120,604 + H281DRAFT_05703 0.24 -1.2
120,604 + H281DRAFT_05703 0.24 +1.8
120,745 + H281DRAFT_05703 0.40 +0.6
120,745 + H281DRAFT_05703 0.40 -0.3
120,746 - H281DRAFT_05703 0.40 +0.6
120,764 - H281DRAFT_05703 0.42 +1.3
120,764 - H281DRAFT_05703 0.42 -0.1
120,764 - -0.8
120,848 - H281DRAFT_05703 0.52 -0.0
120,934 + H281DRAFT_05703 0.61 -1.4
120,934 + H281DRAFT_05703 0.61 -0.8
120,935 - H281DRAFT_05703 0.62 -0.3
121,075 + H281DRAFT_05703 0.77 -0.1
121,234 + +1.0
121,235 - +0.4
121,343 + +0.2
121,344 - -0.3
121,351 + +0.0

Or see this region's nucleotide sequence