Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04841

Experiment: Bu1_100

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04840 and H281DRAFT_04841 are separated by 820 nucleotidesH281DRAFT_04841 and H281DRAFT_04842 overlap by 4 nucleotides H281DRAFT_04840: H281DRAFT_04840 - Uncharacterized protein conserved in bacteria, at 278,364 to 279,188 _04840 H281DRAFT_04841: H281DRAFT_04841 - Glycosyltransferase involved in cell wall bisynthesis, at 280,009 to 280,956 _04841 H281DRAFT_04842: H281DRAFT_04842 - hypothetical protein, at 280,953 to 283,577 _04842 Position (kb) 280 281Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 279.022 kb on - strand, within H281DRAFT_04840at 279.143 kb on + strandat 279.186 kb on + strandat 279.189 kb on + strandat 279.190 kb on - strandat 279.245 kb on + strandat 279.304 kb on + strandat 279.305 kb on - strandat 279.433 kb on - strandat 279.461 kb on - strandat 279.497 kb on + strandat 279.497 kb on + strandat 279.498 kb on - strandat 279.727 kb on - strandat 279.727 kb on - strandat 279.856 kb on + strandat 279.890 kb on + strandat 279.890 kb on + strandat 279.891 kb on - strandat 279.891 kb on - strandat 279.891 kb on - strandat 279.893 kb on + strandat 279.893 kb on + strandat 279.893 kb on + strandat 279.894 kb on - strandat 279.894 kb on - strandat 279.894 kb on - strandat 279.894 kb on - strandat 279.952 kb on + strandat 279.952 kb on + strandat 279.953 kb on - strandat 279.956 kb on + strandat 279.956 kb on + strandat 279.956 kb on + strandat 279.957 kb on - strandat 280.058 kb on + strandat 280.058 kb on + strandat 280.105 kb on + strand, within H281DRAFT_04841at 280.106 kb on - strand, within H281DRAFT_04841at 280.199 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.303 kb on + strand, within H281DRAFT_04841at 280.303 kb on + strand, within H281DRAFT_04841at 280.334 kb on + strand, within H281DRAFT_04841at 280.334 kb on + strand, within H281DRAFT_04841at 280.502 kb on + strand, within H281DRAFT_04841at 280.503 kb on - strand, within H281DRAFT_04841at 280.592 kb on + strand, within H281DRAFT_04841at 280.593 kb on - strandat 280.622 kb on + strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.693 kb on - strand, within H281DRAFT_04841at 280.693 kb on - strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.884 kb on + strandat 280.885 kb on - strandat 280.885 kb on - strandat 280.920 kb on - strandat 280.920 kb on - strandat 280.934 kb on - strandat 280.934 kb on - strandat 280.986 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.010 kb on - strandat 281.060 kb on - strandat 281.067 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.118 kb on - strandat 281.147 kb on + strandat 281.212 kb on + strandat 281.213 kb on - strandat 281.275 kb on + strand, within H281DRAFT_04842at 281.276 kb on - strand, within H281DRAFT_04842at 281.276 kb on - strand, within H281DRAFT_04842at 281.299 kb on + strand, within H281DRAFT_04842at 281.299 kb on + strand, within H281DRAFT_04842at 281.300 kb on - strand, within H281DRAFT_04842at 281.300 kb on - strand, within H281DRAFT_04842at 281.358 kb on + strand, within H281DRAFT_04842at 281.358 kb on + strand, within H281DRAFT_04842at 281.495 kb on - strand, within H281DRAFT_04842at 281.545 kb on + strand, within H281DRAFT_04842at 281.545 kb on + strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.643 kb on - strand, within H281DRAFT_04842at 281.643 kb on - strand, within H281DRAFT_04842at 281.650 kb on + strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.700 kb on + strand, within H281DRAFT_04842at 281.778 kb on - strand, within H281DRAFT_04842at 281.827 kb on + strand, within H281DRAFT_04842at 281.828 kb on - strand, within H281DRAFT_04842at 281.848 kb on + strand, within H281DRAFT_04842at 281.848 kb on + strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.911 kb on + strand, within H281DRAFT_04842at 281.941 kb on + strand, within H281DRAFT_04842at 281.942 kb on - strand, within H281DRAFT_04842at 281.942 kb on - strand, within H281DRAFT_04842

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
remove
279,022 - H281DRAFT_04840 0.80 -3.0
279,143 + -0.7
279,186 + -0.0
279,189 + +0.3
279,190 - +0.2
279,245 + -0.1
279,304 + -0.0
279,305 - -0.5
279,433 - +0.4
279,461 - +0.5
279,497 + +0.6
279,497 + +0.3
279,498 - +0.4
279,727 - +0.2
279,727 - -0.1
279,856 + -0.4
279,890 + -1.8
279,890 + -0.0
279,891 - -0.5
279,891 - -0.0
279,891 - +0.7
279,893 + +0.7
279,893 + +2.3
279,893 + +0.4
279,894 - +0.3
279,894 - +0.2
279,894 - +0.2
279,894 - -0.5
279,952 + +0.9
279,952 + +0.9
279,953 - -0.2
279,956 + -0.2
279,956 + +1.1
279,956 + +0.3
279,957 - -0.2
280,058 + +1.0
280,058 + +0.8
280,105 + H281DRAFT_04841 0.10 -1.0
280,106 - H281DRAFT_04841 0.10 -0.3
280,199 + H281DRAFT_04841 0.20 +0.7
280,275 + H281DRAFT_04841 0.28 -0.9
280,275 + H281DRAFT_04841 0.28 -2.3
280,275 + H281DRAFT_04841 0.28 +1.5
280,276 - H281DRAFT_04841 0.28 +0.3
280,276 - H281DRAFT_04841 0.28 +0.6
280,276 - H281DRAFT_04841 0.28 +1.6
280,303 + H281DRAFT_04841 0.31 +0.9
280,303 + H281DRAFT_04841 0.31 -0.1
280,334 + H281DRAFT_04841 0.34 +0.8
280,334 + H281DRAFT_04841 0.34 -0.9
280,502 + H281DRAFT_04841 0.52 -0.7
280,503 - H281DRAFT_04841 0.52 +0.1
280,592 + H281DRAFT_04841 0.61 +1.6
280,593 - +0.8
280,622 + H281DRAFT_04841 0.65 +0.7
280,623 - H281DRAFT_04841 0.65 +1.0
280,623 - H281DRAFT_04841 0.65 +1.0
280,623 - H281DRAFT_04841 0.65 +2.0
280,688 + H281DRAFT_04841 0.72 +1.0
280,688 + H281DRAFT_04841 0.72 +1.3
280,688 + H281DRAFT_04841 0.72 +2.0
280,689 - H281DRAFT_04841 0.72 +1.8
280,689 - H281DRAFT_04841 0.72 +1.3
280,689 - H281DRAFT_04841 0.72 -2.1
280,689 - H281DRAFT_04841 0.72 +1.6
280,693 - H281DRAFT_04841 0.72 +0.8
280,693 - H281DRAFT_04841 0.72 +0.2
280,715 + H281DRAFT_04841 0.74 +1.6
280,715 + H281DRAFT_04841 0.74 +1.2
280,715 + H281DRAFT_04841 0.74 +0.6
280,716 - H281DRAFT_04841 0.75 +1.2
280,716 - H281DRAFT_04841 0.75 +0.0
280,716 - H281DRAFT_04841 0.75 +0.9
280,716 - H281DRAFT_04841 0.75 +2.1
280,716 - H281DRAFT_04841 0.75 +0.9
280,851 - H281DRAFT_04841 0.89 -0.5
280,851 - H281DRAFT_04841 0.89 +0.9
280,851 - H281DRAFT_04841 0.89 -1.3
280,884 + +0.9
280,885 - +1.0
280,885 - +0.7
280,920 - +1.0
280,920 - +1.3
280,934 - +1.4
280,934 - -2.6
280,986 + +0.7
281,009 + +0.9
281,009 + -0.5
281,009 + +0.4
281,009 + +1.1
281,009 + -0.5
281,010 - -0.4
281,060 - -0.6
281,067 + +0.5
281,117 + +1.3
281,117 + -1.6
281,117 + +0.7
281,117 + +0.3
281,117 + -2.3
281,117 + +0.9
281,117 + +1.1
281,118 - -0.9
281,147 + +0.7
281,212 + -2.2
281,213 - +1.0
281,275 + H281DRAFT_04842 0.12 +0.7
281,276 - H281DRAFT_04842 0.12 +0.7
281,276 - H281DRAFT_04842 0.12 -1.6
281,299 + H281DRAFT_04842 0.13 +0.6
281,299 + H281DRAFT_04842 0.13 +1.4
281,300 - H281DRAFT_04842 0.13 -1.0
281,300 - H281DRAFT_04842 0.13 -0.4
281,358 + H281DRAFT_04842 0.15 -1.0
281,358 + H281DRAFT_04842 0.15 +0.5
281,495 - H281DRAFT_04842 0.21 -1.5
281,545 + H281DRAFT_04842 0.23 +1.0
281,545 + H281DRAFT_04842 0.23 -2.1
281,546 - H281DRAFT_04842 0.23 -0.2
281,546 - H281DRAFT_04842 0.23 -0.6
281,546 - H281DRAFT_04842 0.23 -0.2
281,546 - H281DRAFT_04842 0.23 -1.5
281,630 + H281DRAFT_04842 0.26 +0.6
281,630 + H281DRAFT_04842 0.26 +1.3
281,630 + H281DRAFT_04842 0.26 -1.0
281,631 - H281DRAFT_04842 0.26 -0.6
281,631 - H281DRAFT_04842 0.26 -3.9
281,631 - H281DRAFT_04842 0.26 +0.2
281,642 + H281DRAFT_04842 0.26 -0.5
281,642 + H281DRAFT_04842 0.26 +0.7
281,642 + H281DRAFT_04842 0.26 +1.3
281,642 + H281DRAFT_04842 0.26 +0.9
281,643 - H281DRAFT_04842 0.26 +0.3
281,643 - H281DRAFT_04842 0.26 -1.8
281,650 + H281DRAFT_04842 0.27 +1.0
281,651 - H281DRAFT_04842 0.27 -0.6
281,651 - H281DRAFT_04842 0.27 +0.6
281,651 - H281DRAFT_04842 0.27 -0.2
281,679 + H281DRAFT_04842 0.28 +1.2
281,679 + H281DRAFT_04842 0.28 +1.3
281,679 + H281DRAFT_04842 0.28 -0.3
281,700 + H281DRAFT_04842 0.28 +0.3
281,778 - H281DRAFT_04842 0.31 -0.4
281,827 + H281DRAFT_04842 0.33 +0.1
281,828 - H281DRAFT_04842 0.33 -4.0
281,848 + H281DRAFT_04842 0.34 -1.5
281,848 + H281DRAFT_04842 0.34 -3.1
281,849 - H281DRAFT_04842 0.34 +0.1
281,849 - H281DRAFT_04842 0.34 -0.6
281,849 - H281DRAFT_04842 0.34 -0.2
281,911 + H281DRAFT_04842 0.36 +1.5
281,941 + H281DRAFT_04842 0.38 +1.3
281,942 - H281DRAFT_04842 0.38 -1.1
281,942 - H281DRAFT_04842 0.38 +0.2

Or see this region's nucleotide sequence