Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04405

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04403 and H281DRAFT_04404 are separated by 230 nucleotidesH281DRAFT_04404 and H281DRAFT_04405 are separated by 11 nucleotidesH281DRAFT_04405 and H281DRAFT_04406 are separated by 142 nucleotidesH281DRAFT_04406 and H281DRAFT_04407 are separated by 223 nucleotides H281DRAFT_04403: H281DRAFT_04403 - carbamoyl-phosphate synthase large subunit, at 119,446 to 122,700 _04403 H281DRAFT_04404: H281DRAFT_04404 - GreA/GreB family elongation factor, at 122,931 to 123,407 _04404 H281DRAFT_04405: H281DRAFT_04405 - protein of unknown function (DUF4149), at 123,419 to 123,937 _04405 H281DRAFT_04406: H281DRAFT_04406 - putative RNA-binding protein, YhbY family, at 124,080 to 124,607 _04406 H281DRAFT_04407: H281DRAFT_04407 - 23S rRNA Um-2552 2'-O-methyltransferase, at 124,831 to 125,493 _04407 Position (kb) 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 122.672 kb on + strandat 122.673 kb on - strandat 122.725 kb on + strandat 122.725 kb on + strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.804 kb on + strandat 122.930 kb on + strandat 122.939 kb on + strandat 122.940 kb on - strandat 122.940 kb on - strandat 123.072 kb on + strand, within H281DRAFT_04404at 123.072 kb on + strand, within H281DRAFT_04404at 123.072 kb on + strand, within H281DRAFT_04404at 123.378 kb on + strandat 123.379 kb on - strandat 123.395 kb on + strandat 123.396 kb on - strandat 123.396 kb on - strandat 123.396 kb on - strandat 123.399 kb on + strandat 123.701 kb on + strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.824 kb on + strand, within H281DRAFT_04405at 123.825 kb on - strand, within H281DRAFT_04405at 123.825 kb on - strand, within H281DRAFT_04405at 123.935 kb on + strandat 123.936 kb on - strandat 124.045 kb on - strandat 124.081 kb on + strandat 124.081 kb on + strandat 124.082 kb on - strandat 124.082 kb on - strandat 124.082 kb on - strandat 124.349 kb on + strand, within H281DRAFT_04406at 124.367 kb on + strand, within H281DRAFT_04406at 124.411 kb on + strand, within H281DRAFT_04406at 124.651 kb on + strandat 124.692 kb on + strandat 124.706 kb on + strandat 124.743 kb on + strandat 124.743 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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122,672 + -1.9
122,673 - -1.1
122,725 + -1.1
122,725 + +1.0
122,726 - -2.3
122,726 - +1.1
122,726 - +2.4
122,726 - +3.3
122,726 - +0.1
122,804 + +1.1
122,930 + +0.7
122,939 + +0.9
122,940 - +0.1
122,940 - +1.2
123,072 + H281DRAFT_04404 0.30 -1.3
123,072 + H281DRAFT_04404 0.30 +2.0
123,072 + H281DRAFT_04404 0.30 +0.2
123,378 + -0.1
123,379 - +0.4
123,395 + -0.2
123,396 - +0.3
123,396 - -1.3
123,396 - +1.3
123,399 + +0.6
123,701 + H281DRAFT_04405 0.54 -0.2
123,780 - H281DRAFT_04405 0.70 -0.4
123,780 - H281DRAFT_04405 0.70 +0.0
123,780 - H281DRAFT_04405 0.70 +0.4
123,780 - H281DRAFT_04405 0.70 -0.1
123,780 - H281DRAFT_04405 0.70 +0.8
123,780 - H281DRAFT_04405 0.70 -0.5
123,824 + H281DRAFT_04405 0.78 -0.6
123,825 - H281DRAFT_04405 0.78 +0.8
123,825 - H281DRAFT_04405 0.78 +0.7
123,935 + -0.9
123,936 - +0.8
124,045 - -0.7
124,081 + -0.9
124,081 + +0.1
124,082 - +0.9
124,082 - -0.2
124,082 - +1.1
124,349 + H281DRAFT_04406 0.51 -0.5
124,367 + H281DRAFT_04406 0.54 -2.1
124,411 + H281DRAFT_04406 0.63 -0.9
124,651 + -0.8
124,692 + -1.3
124,706 + -3.1
124,743 + -1.2
124,743 + -1.2

Or see this region's nucleotide sequence