Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04340

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04339 and H281DRAFT_04340 are separated by 733 nucleotidesH281DRAFT_04340 and H281DRAFT_04341 overlap by 8 nucleotidesH281DRAFT_04341 and H281DRAFT_04342 overlap by 4 nucleotides H281DRAFT_04339: H281DRAFT_04339 - RNAse E (EC 3.1.26.12), at 55,501 to 58,824 _04339 H281DRAFT_04340: H281DRAFT_04340 - 23S rRNA pseudouridine955/2504/2580 synthase, at 59,558 to 60,595 _04340 H281DRAFT_04341: H281DRAFT_04341 - phosphoglycolate phosphatase, at 60,588 to 61,247 _04341 H281DRAFT_04342: H281DRAFT_04342 - Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase, at 61,244 to 61,660 _04342 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2 3at 58.914 kb on - strandat 59.466 kb on - strandat 59.479 kb on - strandat 59.479 kb on - strandat 59.479 kb on - strandat 59.549 kb on - strandat 59.550 kb on + strandat 59.550 kb on + strandat 59.550 kb on + strandat 59.577 kb on + strandat 59.686 kb on + strand, within H281DRAFT_04340at 59.687 kb on - strand, within H281DRAFT_04340at 59.711 kb on + strand, within H281DRAFT_04340at 59.711 kb on + strand, within H281DRAFT_04340at 59.711 kb on + strand, within H281DRAFT_04340at 59.712 kb on - strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.040 kb on - strand, within H281DRAFT_04340at 60.040 kb on - strand, within H281DRAFT_04340at 60.040 kb on - strand, within H281DRAFT_04340at 60.107 kb on - strand, within H281DRAFT_04340at 60.107 kb on - strand, within H281DRAFT_04340at 60.113 kb on + strand, within H281DRAFT_04340at 60.114 kb on - strand, within H281DRAFT_04340at 60.114 kb on - strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.117 kb on - strand, within H281DRAFT_04340at 60.117 kb on - strand, within H281DRAFT_04340at 60.188 kb on + strand, within H281DRAFT_04340at 60.188 kb on + strand, within H281DRAFT_04340at 60.281 kb on + strand, within H281DRAFT_04340at 60.555 kb on + strandat 60.593 kb on + strandat 60.593 kb on + strandat 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.727 kb on - strand, within H281DRAFT_04341at 60.727 kb on - strand, within H281DRAFT_04341at 60.825 kb on + strand, within H281DRAFT_04341at 60.825 kb on + strand, within H281DRAFT_04341at 60.826 kb on - strand, within H281DRAFT_04341at 60.901 kb on - strand, within H281DRAFT_04341at 61.149 kb on + strand, within H281DRAFT_04341at 61.150 kb on - strand, within H281DRAFT_04341at 61.150 kb on - strand, within H281DRAFT_04341at 61.194 kb on + strandat 61.194 kb on + strandat 61.194 kb on + strandat 61.194 kb on + strandat 61.194 kb on + strandat 61.195 kb on - strandat 61.195 kb on - strandat 61.195 kb on - strandat 61.279 kb on + strandat 61.280 kb on - strandat 61.413 kb on - strand, within H281DRAFT_04342at 61.413 kb on - strandat 61.486 kb on - strand, within H281DRAFT_04342at 61.488 kb on - strand, within H281DRAFT_04342at 61.585 kb on - strand, within H281DRAFT_04342

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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58,914 - +0.1
59,466 - -0.9
59,479 - +0.0
59,479 - -0.4
59,479 - -1.4
59,549 - -2.2
59,550 + -0.1
59,550 + +1.7
59,550 + +1.2
59,577 + -0.3
59,686 + H281DRAFT_04340 0.12 +1.5
59,687 - H281DRAFT_04340 0.12 -0.3
59,711 + H281DRAFT_04340 0.15 +0.6
59,711 + H281DRAFT_04340 0.15 +1.4
59,711 + H281DRAFT_04340 0.15 +1.5
59,712 - H281DRAFT_04340 0.15 -2.3
60,039 + H281DRAFT_04340 0.46 +0.5
60,039 + H281DRAFT_04340 0.46 +1.7
60,039 + H281DRAFT_04340 0.46 +1.3
60,039 + H281DRAFT_04340 0.46 +0.3
60,039 + H281DRAFT_04340 0.46 -0.0
60,039 + H281DRAFT_04340 0.46 +0.7
60,040 - H281DRAFT_04340 0.46 -1.5
60,040 - H281DRAFT_04340 0.46 +0.3
60,040 - H281DRAFT_04340 0.46 +0.2
60,107 - H281DRAFT_04340 0.53 -0.9
60,107 - H281DRAFT_04340 0.53 +1.6
60,113 + H281DRAFT_04340 0.53 +1.2
60,114 - H281DRAFT_04340 0.54 +1.4
60,114 - H281DRAFT_04340 0.54 +0.7
60,116 + H281DRAFT_04340 0.54 +2.0
60,116 + H281DRAFT_04340 0.54 +0.9
60,116 + H281DRAFT_04340 0.54 +0.3
60,116 + H281DRAFT_04340 0.54 +1.2
60,116 + H281DRAFT_04340 0.54 -0.4
60,116 + H281DRAFT_04340 0.54 +1.0
60,117 - H281DRAFT_04340 0.54 +0.8
60,117 - H281DRAFT_04340 0.54 +2.3
60,188 + H281DRAFT_04340 0.61 +0.4
60,188 + H281DRAFT_04340 0.61 -1.4
60,281 + H281DRAFT_04340 0.70 -1.7
60,555 + +0.4
60,593 + -0.9
60,593 + +1.3
60,726 + H281DRAFT_04341 0.21 +1.4
60,726 + H281DRAFT_04341 0.21 -0.8
60,726 + H281DRAFT_04341 0.21 -0.0
60,726 + H281DRAFT_04341 0.21 -2.1
60,726 + H281DRAFT_04341 0.21 -0.4
60,726 + H281DRAFT_04341 0.21 -0.6
60,726 + H281DRAFT_04341 0.21 -1.6
60,726 + H281DRAFT_04341 0.21 -0.0
60,727 - H281DRAFT_04341 0.21 +0.3
60,727 - H281DRAFT_04341 0.21 +0.3
60,825 + H281DRAFT_04341 0.36 +1.3
60,825 + H281DRAFT_04341 0.36 +0.7
60,826 - H281DRAFT_04341 0.36 +1.3
60,901 - H281DRAFT_04341 0.47 -1.3
61,149 + H281DRAFT_04341 0.85 -0.1
61,150 - H281DRAFT_04341 0.85 -1.4
61,150 - H281DRAFT_04341 0.85 +3.7
61,194 + -0.7
61,194 + +0.7
61,194 + -0.3
61,194 + +0.2
61,194 + +1.7
61,195 - +0.7
61,195 - +1.4
61,195 - -0.1
61,279 + +0.4
61,280 - +1.7
61,413 - H281DRAFT_04342 0.41 +1.4
61,413 - -0.2
61,486 - H281DRAFT_04342 0.58 -0.5
61,488 - H281DRAFT_04342 0.59 +0.2
61,585 - H281DRAFT_04342 0.82 -1.5

Or see this region's nucleotide sequence