Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03755

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03754 and H281DRAFT_03755 are separated by 43 nucleotidesH281DRAFT_03755 and H281DRAFT_03756 are separated by 181 nucleotides H281DRAFT_03754: H281DRAFT_03754 - 3-(3-hydroxy-phenyl)propionate hydroxylase, at 270,144 to 271,862 _03754 H281DRAFT_03755: H281DRAFT_03755 - Protein of unknown function (DUF2783), at 271,906 to 272,142 _03755 H281DRAFT_03756: H281DRAFT_03756 - D-galactonate transporter, at 272,324 to 273,646 _03756 Position (kb) 271 272 273Strain fitness (log2 ratio) -1 0 1 2at 271.230 kb on + strand, within H281DRAFT_03754at 271.230 kb on + strand, within H281DRAFT_03754at 272.289 kb on + strandat 272.289 kb on + strandat 272.543 kb on + strand, within H281DRAFT_03756at 272.553 kb on - strand, within H281DRAFT_03756at 272.860 kb on + strand, within H281DRAFT_03756at 272.952 kb on - strand, within H281DRAFT_03756at 272.986 kb on + strand, within H281DRAFT_03756

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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271,230 + H281DRAFT_03754 0.63 -0.6
271,230 + H281DRAFT_03754 0.63 +1.2
272,289 + +2.1
272,289 + +1.6
272,543 + H281DRAFT_03756 0.17 -0.4
272,553 - H281DRAFT_03756 0.17 +0.5
272,860 + H281DRAFT_03756 0.41 +0.0
272,952 - H281DRAFT_03756 0.47 -0.9
272,986 + H281DRAFT_03756 0.50 +0.0

Or see this region's nucleotide sequence