Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03100

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03099 and H281DRAFT_03100 are separated by 2 nucleotidesH281DRAFT_03100 and H281DRAFT_03101 are separated by 127 nucleotides H281DRAFT_03099: H281DRAFT_03099 - H+/Cl- antiporter ClcA, at 132,718 to 134,517 _03099 H281DRAFT_03100: H281DRAFT_03100 - DNA-binding transcriptional regulator, MarR family, at 134,520 to 134,936 _03100 H281DRAFT_03101: H281DRAFT_03101 - CBS domain-containing membrane protein, at 135,064 to 136,230 _03101 Position (kb) 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 133.527 kb on + strand, within H281DRAFT_03099at 133.814 kb on - strand, within H281DRAFT_03099at 133.952 kb on - strand, within H281DRAFT_03099at 134.319 kb on + strand, within H281DRAFT_03099at 134.319 kb on + strand, within H281DRAFT_03099at 134.807 kb on - strand, within H281DRAFT_03100at 134.820 kb on - strand, within H281DRAFT_03100at 134.910 kb on - strandat 135.307 kb on + strand, within H281DRAFT_03101at 135.309 kb on + strand, within H281DRAFT_03101at 135.311 kb on + strand, within H281DRAFT_03101at 135.311 kb on + strand, within H281DRAFT_03101at 135.312 kb on - strand, within H281DRAFT_03101at 135.312 kb on - strand, within H281DRAFT_03101

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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133,527 + H281DRAFT_03099 0.45 -1.8
133,814 - H281DRAFT_03099 0.61 -0.2
133,952 - H281DRAFT_03099 0.69 -1.6
134,319 + H281DRAFT_03099 0.89 +0.1
134,319 + H281DRAFT_03099 0.89 -0.5
134,807 - H281DRAFT_03100 0.69 +0.3
134,820 - H281DRAFT_03100 0.72 -0.6
134,910 - +1.8
135,307 + H281DRAFT_03101 0.21 +2.4
135,309 + H281DRAFT_03101 0.21 -0.6
135,311 + H281DRAFT_03101 0.21 +0.2
135,311 + H281DRAFT_03101 0.21 +1.1
135,312 - H281DRAFT_03101 0.21 +0.4
135,312 - H281DRAFT_03101 0.21 +0.5

Or see this region's nucleotide sequence