Experiment: Bu1_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02959 and H281DRAFT_02960 are separated by 31 nucleotides H281DRAFT_02960 and H281DRAFT_02961 are separated by 1 nucleotides H281DRAFT_02961 and H281DRAFT_02962 are separated by 42 nucleotides H281DRAFT_02962 and H281DRAFT_02963 are separated by 75 nucleotides
H281DRAFT_02959: H281DRAFT_02959 - putative spermidine/putrescine transport system substrate-binding protein, at 573,350 to 574,651
_02959
H281DRAFT_02960: H281DRAFT_02960 - putative spermidine/putrescine transport system permease protein, at 574,683 to 575,597
_02960
H281DRAFT_02961: H281DRAFT_02961 - putative spermidine/putrescine transport system permease protein, at 575,599 to 576,495
_02961
H281DRAFT_02962: H281DRAFT_02962 - transcriptional regulator, TetR family, at 576,538 to 577,251
_02962
H281DRAFT_02963: H281DRAFT_02963 - nucleoside ABC transporter membrane protein, at 577,327 to 578,244
_02963
Position (kb) 575
576
577 Strain fitness (log2 ratio) -1
0
1
2 at 574.613 kb on + strand at 574.614 kb on - strand at 574.845 kb on + strand, within H281DRAFT_02960 at 574.939 kb on - strand, within H281DRAFT_02960 at 575.007 kb on + strand, within H281DRAFT_02960 at 575.142 kb on - strand, within H281DRAFT_02960 at 575.197 kb on - strand, within H281DRAFT_02960 at 575.768 kb on + strand at 576.637 kb on + strand, within H281DRAFT_02962 at 576.638 kb on - strand, within H281DRAFT_02962 at 576.692 kb on + strand, within H281DRAFT_02962 at 576.716 kb on + strand, within H281DRAFT_02962 at 577.055 kb on + strand, within H281DRAFT_02962 at 577.056 kb on - strand, within H281DRAFT_02962
Per-strain Table
Position Strand Gene LocusTag Fraction Bu1_100 remove 574,613 + -0.7 574,614 - +2.0 574,845 + H281DRAFT_02960 0.18 +1.0 574,939 - H281DRAFT_02960 0.28 +0.8 575,007 + H281DRAFT_02960 0.35 +0.1 575,142 - H281DRAFT_02960 0.50 -0.9 575,197 - H281DRAFT_02960 0.56 -0.4 575,768 + +1.1 576,637 + H281DRAFT_02962 0.14 -0.9 576,638 - H281DRAFT_02962 0.14 +0.5 576,692 + H281DRAFT_02962 0.22 +0.8 576,716 + H281DRAFT_02962 0.25 -1.0 577,055 + H281DRAFT_02962 0.72 +0.7 577,056 - H281DRAFT_02962 0.73 +0.9
Or see this region's nucleotide sequence