Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02824

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02823 and H281DRAFT_02824 overlap by 4 nucleotidesH281DRAFT_02824 and H281DRAFT_02825 are separated by 239 nucleotides H281DRAFT_02823: H281DRAFT_02823 - PAS/PAC sensor hybrid histidine kinase, at 414,907 to 417,240 _02823 H281DRAFT_02824: H281DRAFT_02824 - cell division protein ZapE, at 417,237 to 418,325 _02824 H281DRAFT_02825: H281DRAFT_02825 - hypothetical protein, at 418,565 to 419,650 _02825 Position (kb) 417 418 419Strain fitness (log2 ratio) -1 0 1at 416.456 kb on + strand, within H281DRAFT_02823at 416.540 kb on - strand, within H281DRAFT_02823at 417.180 kb on + strandat 417.391 kb on - strand, within H281DRAFT_02824at 417.583 kb on + strand, within H281DRAFT_02824at 417.584 kb on - strand, within H281DRAFT_02824at 417.709 kb on + strand, within H281DRAFT_02824at 418.000 kb on + strand, within H281DRAFT_02824at 418.000 kb on + strand, within H281DRAFT_02824at 418.001 kb on - strand, within H281DRAFT_02824at 418.001 kb on - strand, within H281DRAFT_02824at 418.001 kb on - strand, within H281DRAFT_02824at 418.063 kb on + strand, within H281DRAFT_02824at 418.080 kb on - strand, within H281DRAFT_02824at 418.140 kb on + strand, within H281DRAFT_02824at 418.324 kb on - strandat 418.838 kb on + strand, within H281DRAFT_02825at 418.880 kb on - strand, within H281DRAFT_02825at 418.926 kb on - strand, within H281DRAFT_02825at 419.289 kb on - strand, within H281DRAFT_02825

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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416,456 + H281DRAFT_02823 0.66 -1.0
416,540 - H281DRAFT_02823 0.70 +0.5
417,180 + -0.1
417,391 - H281DRAFT_02824 0.14 +0.5
417,583 + H281DRAFT_02824 0.32 -0.9
417,584 - H281DRAFT_02824 0.32 +0.8
417,709 + H281DRAFT_02824 0.43 -0.5
418,000 + H281DRAFT_02824 0.70 -0.2
418,000 + H281DRAFT_02824 0.70 -0.3
418,001 - H281DRAFT_02824 0.70 +0.5
418,001 - H281DRAFT_02824 0.70 +1.3
418,001 - H281DRAFT_02824 0.70 -1.2
418,063 + H281DRAFT_02824 0.76 +0.5
418,080 - H281DRAFT_02824 0.77 +0.1
418,140 + H281DRAFT_02824 0.83 -1.6
418,324 - +0.1
418,838 + H281DRAFT_02825 0.25 +0.4
418,880 - H281DRAFT_02825 0.29 +1.4
418,926 - H281DRAFT_02825 0.33 +0.8
419,289 - H281DRAFT_02825 0.67 -1.3

Or see this region's nucleotide sequence