Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01945

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01945 and H281DRAFT_01946 are separated by 0 nucleotidesH281DRAFT_01946 and H281DRAFT_01947 are separated by 249 nucleotides H281DRAFT_01945: H281DRAFT_01945 - Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain, at 64,033 to 65,052 _01945 H281DRAFT_01946: H281DRAFT_01946 - hypothetical protein, at 65,053 to 65,724 _01946 H281DRAFT_01947: H281DRAFT_01947 - hypothetical protein, at 65,974 to 66,240 _01947 Position (kb) 64 65 66Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 63.136 kb on + strandat 63.220 kb on - strandat 63.220 kb on - strandat 63.220 kb on - strandat 63.220 kb on - strandat 63.368 kb on + strandat 63.406 kb on + strandat 63.406 kb on + strandat 63.406 kb on + strandat 63.407 kb on - strandat 63.407 kb on - strandat 63.407 kb on - strandat 63.429 kb on + strandat 63.430 kb on - strandat 63.430 kb on - strandat 63.430 kb on - strandat 63.430 kb on - strandat 63.483 kb on - strandat 63.483 kb on - strandat 63.591 kb on + strandat 63.592 kb on - strandat 63.592 kb on - strandat 63.597 kb on - strandat 63.597 kb on - strandat 63.650 kb on + strandat 63.697 kb on - strandat 63.697 kb on - strandat 63.697 kb on - strandat 63.740 kb on + strandat 63.741 kb on - strandat 63.741 kb on - strandat 63.741 kb on - strandat 63.744 kb on + strandat 63.813 kb on - strandat 63.837 kb on + strandat 63.845 kb on + strandat 63.846 kb on - strandat 63.846 kb on - strandat 63.846 kb on - strandat 63.932 kb on - strandat 63.958 kb on + strandat 64.016 kb on + strandat 64.017 kb on - strandat 64.040 kb on + strandat 64.040 kb on + strandat 64.040 kb on + strandat 64.040 kb on + strandat 64.040 kb on + strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.041 kb on - strandat 64.174 kb on + strand, within H281DRAFT_01945at 64.221 kb on + strand, within H281DRAFT_01945at 64.292 kb on - strand, within H281DRAFT_01945at 64.292 kb on - strand, within H281DRAFT_01945at 64.299 kb on + strand, within H281DRAFT_01945at 64.299 kb on + strand, within H281DRAFT_01945at 64.299 kb on + strand, within H281DRAFT_01945at 64.384 kb on - strand, within H281DRAFT_01945at 64.563 kb on - strand, within H281DRAFT_01945at 64.563 kb on - strand, within H281DRAFT_01945at 64.872 kb on + strand, within H281DRAFT_01945at 65.039 kb on + strandat 65.040 kb on - strandat 65.152 kb on + strand, within H281DRAFT_01946at 65.153 kb on - strand, within H281DRAFT_01946at 65.238 kb on + strand, within H281DRAFT_01946at 65.238 kb on + strand, within H281DRAFT_01946at 65.263 kb on + strand, within H281DRAFT_01946at 65.263 kb on + strand, within H281DRAFT_01946at 65.264 kb on - strand, within H281DRAFT_01946at 65.264 kb on - strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.320 kb on + strand, within H281DRAFT_01946at 65.341 kb on + strand, within H281DRAFT_01946at 65.341 kb on + strand, within H281DRAFT_01946at 65.354 kb on + strand, within H281DRAFT_01946at 65.355 kb on - strandat 65.355 kb on - strand, within H281DRAFT_01946at 65.462 kb on + strand, within H281DRAFT_01946at 65.527 kb on - strand, within H281DRAFT_01946at 65.743 kb on + strandat 65.743 kb on + strandat 65.811 kb on + strandat 65.811 kb on + strandat 65.811 kb on + strandat 65.812 kb on - strandat 65.812 kb on - strandat 65.812 kb on - strandat 65.919 kb on + strandat 65.919 kb on + strandat 65.919 kb on + strandat 65.920 kb on - strandat 65.920 kb on - strandat 65.920 kb on - strandat 65.959 kb on - strandat 65.986 kb on + strandat 65.986 kb on + strandat 65.986 kb on + strandat 65.987 kb on - strandat 65.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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63,136 + +1.0
63,220 - +0.6
63,220 - +1.0
63,220 - -1.8
63,220 - +0.4
63,368 + -1.4
63,406 + -0.1
63,406 + +0.5
63,406 + +1.3
63,407 - -2.0
63,407 - +1.0
63,407 - +0.5
63,429 + -0.1
63,430 - -0.5
63,430 - -0.5
63,430 - -1.3
63,430 - -2.2
63,483 - +0.1
63,483 - +1.0
63,591 + -1.1
63,592 - +0.3
63,592 - -1.1
63,597 - +0.4
63,597 - -0.1
63,650 + -1.7
63,697 - +0.8
63,697 - +0.5
63,697 - +1.1
63,740 + +1.1
63,741 - +0.8
63,741 - -1.5
63,741 - +0.2
63,744 + -2.4
63,813 - -0.5
63,837 + -2.6
63,845 + -2.1
63,846 - +0.8
63,846 - -0.9
63,846 - -0.7
63,932 - -0.2
63,958 + -2.4
64,016 + +0.5
64,017 - +1.3
64,040 + +0.2
64,040 + +0.2
64,040 + +0.1
64,040 + +0.6
64,040 + -1.0
64,041 - +0.1
64,041 - +0.6
64,041 - +0.2
64,041 - -0.6
64,041 - +0.5
64,041 - +0.2
64,041 - +0.4
64,041 - -1.3
64,041 - -0.9
64,041 - +0.5
64,174 + H281DRAFT_01945 0.14 -2.0
64,221 + H281DRAFT_01945 0.18 -0.8
64,292 - H281DRAFT_01945 0.25 +1.3
64,292 - H281DRAFT_01945 0.25 +0.9
64,299 + H281DRAFT_01945 0.26 -0.5
64,299 + H281DRAFT_01945 0.26 +0.0
64,299 + H281DRAFT_01945 0.26 -2.8
64,384 - H281DRAFT_01945 0.34 -0.7
64,563 - H281DRAFT_01945 0.52 -0.4
64,563 - H281DRAFT_01945 0.52 -3.0
64,872 + H281DRAFT_01945 0.82 -3.0
65,039 + -3.3
65,040 - -1.2
65,152 + H281DRAFT_01946 0.15 -3.8
65,153 - H281DRAFT_01946 0.15 +1.2
65,238 + H281DRAFT_01946 0.28 -3.3
65,238 + H281DRAFT_01946 0.28 -0.9
65,263 + H281DRAFT_01946 0.31 -1.5
65,263 + H281DRAFT_01946 0.31 -4.1
65,264 - H281DRAFT_01946 0.31 -1.4
65,264 - H281DRAFT_01946 0.31 +1.2
65,320 + H281DRAFT_01946 0.40 -3.5
65,320 + H281DRAFT_01946 0.40 -2.8
65,320 + H281DRAFT_01946 0.40 -1.8
65,320 + H281DRAFT_01946 0.40 -3.4
65,341 + H281DRAFT_01946 0.43 -2.8
65,341 + H281DRAFT_01946 0.43 -3.1
65,354 + H281DRAFT_01946 0.45 -0.8
65,355 - +0.5
65,355 - H281DRAFT_01946 0.45 +2.1
65,462 + H281DRAFT_01946 0.61 -2.6
65,527 - H281DRAFT_01946 0.71 -0.7
65,743 + -2.8
65,743 + -3.1
65,811 + -3.4
65,811 + +0.8
65,811 + +0.2
65,812 - +0.7
65,812 - -0.1
65,812 - +0.4
65,919 + -1.6
65,919 + +1.0
65,919 + -1.2
65,920 - -0.0
65,920 - +0.2
65,920 - +0.6
65,959 - -0.6
65,986 + +1.1
65,986 + -1.3
65,986 + -0.6
65,987 - +2.4
65,987 - -0.6

Or see this region's nucleotide sequence