Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01710

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01709 and H281DRAFT_01710 are separated by 182 nucleotidesH281DRAFT_01710 and H281DRAFT_01711 are separated by 566 nucleotides H281DRAFT_01709: H281DRAFT_01709 - hypothetical protein, at 595,150 to 595,962 _01709 H281DRAFT_01710: H281DRAFT_01710 - hypothetical protein, at 596,145 to 596,270 _01710 H281DRAFT_01711: H281DRAFT_01711 - Na/Pi-cotransporter, at 596,837 to 597,793 _01711 Position (kb) 596 597Strain fitness (log2 ratio) -2 -1 0 1 2 3at 595.329 kb on - strand, within H281DRAFT_01709at 595.376 kb on + strand, within H281DRAFT_01709at 595.377 kb on - strand, within H281DRAFT_01709at 595.380 kb on + strand, within H281DRAFT_01709at 595.380 kb on + strand, within H281DRAFT_01709at 595.467 kb on - strand, within H281DRAFT_01709at 596.026 kb on - strandat 596.130 kb on - strandat 596.268 kb on + strandat 596.282 kb on - strandat 596.287 kb on + strandat 596.527 kb on - strandat 596.533 kb on + strandat 596.701 kb on - strandat 596.838 kb on + strandat 596.941 kb on + strand, within H281DRAFT_01711at 597.036 kb on + strand, within H281DRAFT_01711at 597.146 kb on - strand, within H281DRAFT_01711

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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595,329 - H281DRAFT_01709 0.22 -0.8
595,376 + H281DRAFT_01709 0.28 -1.9
595,377 - H281DRAFT_01709 0.28 -0.7
595,380 + H281DRAFT_01709 0.28 -0.4
595,380 + H281DRAFT_01709 0.28 +3.1
595,467 - H281DRAFT_01709 0.39 +0.5
596,026 - -0.2
596,130 - +1.5
596,268 + +0.5
596,282 - -0.3
596,287 + +0.9
596,527 - +1.2
596,533 + +1.0
596,701 - +1.4
596,838 + +0.7
596,941 + H281DRAFT_01711 0.11 +0.5
597,036 + H281DRAFT_01711 0.21 +0.5
597,146 - H281DRAFT_01711 0.32 -2.3

Or see this region's nucleotide sequence