Experiment: Bu1_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01575 and H281DRAFT_01576 are separated by 248 nucleotides H281DRAFT_01576 and H281DRAFT_01577 are separated by 40 nucleotides H281DRAFT_01577 and H281DRAFT_01578 are separated by 301 nucleotides
H281DRAFT_01575: H281DRAFT_01575 - transcriptional regulator, LysR family, at 450,957 to 451,889
_01575
H281DRAFT_01576: H281DRAFT_01576 - Threonine/homoserine/homoserine lactone efflux protein, at 452,138 to 452,764
_01576
H281DRAFT_01577: H281DRAFT_01577 - transcriptional regulator, GntR family, at 452,805 to 454,220
_01577
H281DRAFT_01578: H281DRAFT_01578 - beta-alanine--pyruvate transaminase, at 454,522 to 455,850
_01578
Position (kb) 452
453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 451.917 kb on + strand at 451.932 kb on + strand at 451.932 kb on + strand at 451.937 kb on - strand at 452.144 kb on + strand at 452.145 kb on - strand at 452.282 kb on - strand, within H281DRAFT_01576 at 452.284 kb on + strand, within H281DRAFT_01576 at 452.360 kb on + strand, within H281DRAFT_01576 at 452.471 kb on + strand, within H281DRAFT_01576 at 452.558 kb on + strand, within H281DRAFT_01576 at 452.559 kb on - strand, within H281DRAFT_01576 at 452.559 kb on - strand, within H281DRAFT_01576 at 452.594 kb on + strand, within H281DRAFT_01576 at 452.594 kb on + strand, within H281DRAFT_01576 at 452.594 kb on + strand, within H281DRAFT_01576 at 452.914 kb on + strand at 452.914 kb on + strand at 453.239 kb on - strand, within H281DRAFT_01577 at 453.286 kb on + strand, within H281DRAFT_01577 at 453.287 kb on - strand, within H281DRAFT_01577 at 453.592 kb on + strand, within H281DRAFT_01577 at 453.772 kb on + strand, within H281DRAFT_01577 at 454.042 kb on + strand, within H281DRAFT_01577 at 454.042 kb on + strand, within H281DRAFT_01577 at 454.108 kb on - strand at 454.108 kb on - strand at 454.161 kb on + strand at 454.161 kb on + strand at 454.161 kb on + strand at 454.256 kb on - strand at 454.388 kb on + strand at 454.630 kb on + strand at 454.630 kb on + strand at 454.630 kb on + strand at 454.630 kb on + strand at 454.631 kb on - strand at 454.679 kb on + strand, within H281DRAFT_01578 at 454.679 kb on + strand, within H281DRAFT_01578 at 454.680 kb on - strand, within H281DRAFT_01578 at 454.680 kb on - strand, within H281DRAFT_01578 at 454.901 kb on - strand, within H281DRAFT_01578
Per-strain Table
Position Strand Gene LocusTag Fraction Bu1_100 remove 451,917 + -0.3 451,932 + +0.1 451,932 + -0.4 451,937 - -1.6 452,144 + +0.9 452,145 - -0.4 452,282 - H281DRAFT_01576 0.23 -1.0 452,284 + H281DRAFT_01576 0.23 +0.4 452,360 + H281DRAFT_01576 0.35 +0.1 452,471 + H281DRAFT_01576 0.53 -0.5 452,558 + H281DRAFT_01576 0.67 -0.4 452,559 - H281DRAFT_01576 0.67 -1.8 452,559 - H281DRAFT_01576 0.67 -2.7 452,594 + H281DRAFT_01576 0.73 -0.2 452,594 + H281DRAFT_01576 0.73 -0.2 452,594 + H281DRAFT_01576 0.73 -1.2 452,914 + +0.3 452,914 + +0.5 453,239 - H281DRAFT_01577 0.31 -2.1 453,286 + H281DRAFT_01577 0.34 -0.4 453,287 - H281DRAFT_01577 0.34 -0.3 453,592 + H281DRAFT_01577 0.56 +0.1 453,772 + H281DRAFT_01577 0.68 +1.7 454,042 + H281DRAFT_01577 0.87 +0.4 454,042 + H281DRAFT_01577 0.87 +0.5 454,108 - +2.0 454,108 - +0.9 454,161 + +1.4 454,161 + +0.7 454,161 + -1.1 454,256 - -1.2 454,388 + +0.1 454,630 + +0.7 454,630 + -3.3 454,630 + +0.6 454,630 + -0.0 454,631 - -1.8 454,679 + H281DRAFT_01578 0.12 -1.5 454,679 + H281DRAFT_01578 0.12 -2.0 454,680 - H281DRAFT_01578 0.12 -2.8 454,680 - H281DRAFT_01578 0.12 -1.0 454,901 - H281DRAFT_01578 0.29 +0.3
Or see this region's nucleotide sequence