Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01166

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01163 and H281DRAFT_01164 are separated by 83 nucleotidesH281DRAFT_01164 and H281DRAFT_01165 are separated by 120 nucleotidesH281DRAFT_01165 and H281DRAFT_01166 are separated by 156 nucleotidesH281DRAFT_01166 and H281DRAFT_01167 are separated by 252 nucleotides H281DRAFT_01163: H281DRAFT_01163 - hypothetical protein, at 1,311,938 to 1,312,306 _01163 H281DRAFT_01164: H281DRAFT_01164 - hypothetical protein, at 1,312,390 to 1,312,659 _01164 H281DRAFT_01165: H281DRAFT_01165 - hypothetical protein, at 1,312,780 to 1,313,031 _01165 H281DRAFT_01166: H281DRAFT_01166 - p-hydroxybenzoate 3-monooxygenase, at 1,313,188 to 1,314,366 _01166 H281DRAFT_01167: H281DRAFT_01167 - threonine ammonia-lyase, biosynthetic, long form, at 1,314,619 to 1,315,464 _01167 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -2 -1 0 1at 1312.723 kb on - strandat 1312.821 kb on + strand, within H281DRAFT_01165at 1312.882 kb on - strand, within H281DRAFT_01165at 1313.710 kb on - strand, within H281DRAFT_01166at 1313.998 kb on + strand, within H281DRAFT_01166at 1314.072 kb on - strand, within H281DRAFT_01166at 1314.072 kb on - strand, within H281DRAFT_01166at 1314.479 kb on + strandat 1314.766 kb on - strand, within H281DRAFT_01167at 1314.903 kb on - strand, within H281DRAFT_01167at 1314.903 kb on - strand, within H281DRAFT_01167

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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1,312,723 - -0.5
1,312,821 + H281DRAFT_01165 0.16 -2.3
1,312,882 - H281DRAFT_01165 0.40 +1.0
1,313,710 - H281DRAFT_01166 0.44 -2.0
1,313,998 + H281DRAFT_01166 0.69 +0.5
1,314,072 - H281DRAFT_01166 0.75 -0.2
1,314,072 - H281DRAFT_01166 0.75 +1.3
1,314,479 + +1.2
1,314,766 - H281DRAFT_01167 0.17 -0.7
1,314,903 - H281DRAFT_01167 0.34 -1.4
1,314,903 - H281DRAFT_01167 0.34 +0.2

Or see this region's nucleotide sequence