Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01104

Experiment: Bu1_100

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01103 and H281DRAFT_01104 are separated by 352 nucleotidesH281DRAFT_01104 and H281DRAFT_01105 are separated by 441 nucleotides H281DRAFT_01103: H281DRAFT_01103 - starvation-inducible DNA-binding protein, at 1,240,264 to 1,240,782 _01103 H281DRAFT_01104: H281DRAFT_01104 - non-heme chloroperoxidase, at 1,241,135 to 1,241,956 _01104 H281DRAFT_01105: H281DRAFT_01105 - transcriptional regulator, AraC family, at 1,242,398 to 1,243,312 _01105 Position (kb) 1241 1242Strain fitness (log2 ratio) -2 -1 0 1at 1240.185 kb on + strandat 1240.212 kb on - strandat 1240.394 kb on - strand, within H281DRAFT_01103at 1240.422 kb on + strand, within H281DRAFT_01103at 1240.423 kb on - strand, within H281DRAFT_01103at 1240.447 kb on + strand, within H281DRAFT_01103at 1240.573 kb on - strand, within H281DRAFT_01103at 1240.640 kb on + strand, within H281DRAFT_01103at 1240.641 kb on - strand, within H281DRAFT_01103at 1241.351 kb on + strand, within H281DRAFT_01104at 1241.444 kb on + strand, within H281DRAFT_01104at 1241.445 kb on - strand, within H281DRAFT_01104at 1241.601 kb on - strand, within H281DRAFT_01104at 1241.624 kb on + strand, within H281DRAFT_01104at 1241.747 kb on + strand, within H281DRAFT_01104at 1241.876 kb on + strandat 1242.099 kb on + strandat 1242.150 kb on - strandat 1242.150 kb on - strandat 1242.203 kb on - strandat 1242.409 kb on + strandat 1242.410 kb on - strandat 1242.623 kb on + strand, within H281DRAFT_01105at 1242.624 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
remove
1,240,185 + -1.6
1,240,212 - +0.1
1,240,394 - H281DRAFT_01103 0.25 +0.5
1,240,422 + H281DRAFT_01103 0.30 -0.3
1,240,423 - H281DRAFT_01103 0.31 +0.7
1,240,447 + H281DRAFT_01103 0.35 -0.4
1,240,573 - H281DRAFT_01103 0.60 -0.6
1,240,640 + H281DRAFT_01103 0.72 +1.0
1,240,641 - H281DRAFT_01103 0.73 -0.4
1,241,351 + H281DRAFT_01104 0.26 -0.5
1,241,444 + H281DRAFT_01104 0.38 +0.3
1,241,445 - H281DRAFT_01104 0.38 -0.8
1,241,601 - H281DRAFT_01104 0.57 -1.9
1,241,624 + H281DRAFT_01104 0.59 -0.2
1,241,747 + H281DRAFT_01104 0.74 -2.6
1,241,876 + +0.8
1,242,099 + -1.6
1,242,150 - -0.6
1,242,150 - -1.7
1,242,203 - -0.2
1,242,409 + +0.1
1,242,410 - +0.9
1,242,623 + H281DRAFT_01105 0.25 +1.1
1,242,624 - +0.5

Or see this region's nucleotide sequence