Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00977

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00976 and H281DRAFT_00977 are separated by 232 nucleotidesH281DRAFT_00977 and H281DRAFT_00978 are separated by 366 nucleotidesH281DRAFT_00978 and H281DRAFT_00979 are separated by 129 nucleotides H281DRAFT_00976: H281DRAFT_00976 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 1,094,891 to 1,095,826 _00976 H281DRAFT_00977: H281DRAFT_00977 - hypothetical protein, at 1,096,059 to 1,096,424 _00977 H281DRAFT_00978: H281DRAFT_00978 - glutathione S-transferase, at 1,096,791 to 1,097,267 _00978 H281DRAFT_00979: H281DRAFT_00979 - enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+), at 1,097,397 to 1,098,593 _00979 Position (kb) 1096 1097Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1095.187 kb on + strand, within H281DRAFT_00976at 1095.601 kb on + strand, within H281DRAFT_00976at 1095.876 kb on + strandat 1095.877 kb on - strandat 1095.890 kb on + strandat 1096.342 kb on + strand, within H281DRAFT_00977at 1096.343 kb on - strand, within H281DRAFT_00977at 1096.487 kb on + strandat 1096.491 kb on - strandat 1096.602 kb on + strandat 1096.603 kb on - strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.637 kb on - strandat 1096.822 kb on + strandat 1096.971 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.207 kb on + strand, within H281DRAFT_00978at 1097.208 kb on - strand, within H281DRAFT_00978at 1097.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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1,095,187 + H281DRAFT_00976 0.32 -2.1
1,095,601 + H281DRAFT_00976 0.76 +0.8
1,095,876 + +0.1
1,095,877 - +0.6
1,095,890 + -1.7
1,096,342 + H281DRAFT_00977 0.77 -2.0
1,096,343 - H281DRAFT_00977 0.78 -0.7
1,096,487 + +1.9
1,096,491 - +0.3
1,096,602 + +2.7
1,096,603 - -0.3
1,096,636 + -0.1
1,096,636 + +1.1
1,096,636 + -0.1
1,096,636 + +1.1
1,096,636 + -1.3
1,096,636 + +0.3
1,096,637 - -1.4
1,096,822 + +0.3
1,096,971 + H281DRAFT_00978 0.38 -1.6
1,097,205 + H281DRAFT_00978 0.87 +0.5
1,097,205 + H281DRAFT_00978 0.87 -0.2
1,097,205 + H281DRAFT_00978 0.87 -1.7
1,097,205 + H281DRAFT_00978 0.87 -0.7
1,097,206 - H281DRAFT_00978 0.87 -0.4
1,097,206 - H281DRAFT_00978 0.87 -1.8
1,097,206 - H281DRAFT_00978 0.87 -0.8
1,097,206 - H281DRAFT_00978 0.87 +0.2
1,097,207 + H281DRAFT_00978 0.87 -0.2
1,097,208 - H281DRAFT_00978 0.87 -2.2
1,097,245 - +3.1

Or see this region's nucleotide sequence