Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00488

Experiment: Bu1_100

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00487 and H281DRAFT_00488 overlap by 52 nucleotidesH281DRAFT_00488 and H281DRAFT_00489 are separated by 37 nucleotides H281DRAFT_00487: H281DRAFT_00487 - bacterial peptide chain release factor 2 (bRF-2), at 544,779 to 546,098 _00487 H281DRAFT_00488: H281DRAFT_00488 - exonuclease RecJ, at 546,047 to 547,753 _00488 H281DRAFT_00489: H281DRAFT_00489 - hypothetical protein, at 547,791 to 548,975 _00489 Position (kb) 546 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 545.897 kb on - strand, within H281DRAFT_00487at 545.919 kb on - strand, within H281DRAFT_00487at 546.048 kb on + strandat 546.048 kb on + strandat 546.118 kb on - strandat 547.159 kb on - strand, within H281DRAFT_00488at 547.159 kb on - strand, within H281DRAFT_00488at 547.665 kb on + strandat 547.666 kb on - strandat 547.666 kb on - strandat 548.701 kb on + strand, within H281DRAFT_00489at 548.702 kb on - strand, within H281DRAFT_00489

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
remove
545,897 - H281DRAFT_00487 0.85 +0.4
545,919 - H281DRAFT_00487 0.86 +1.6
546,048 + -1.5
546,048 + +1.7
546,118 - -3.0
547,159 - H281DRAFT_00488 0.65 +0.5
547,159 - H281DRAFT_00488 0.65 +0.4
547,665 + -1.6
547,666 - +0.7
547,666 - +2.1
548,701 + H281DRAFT_00489 0.77 +2.1
548,702 - H281DRAFT_00489 0.77 +0.1

Or see this region's nucleotide sequence