Experiment: marine broth 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09320 and PGA1_c09330 are separated by 1 nucleotides PGA1_c09330 and PGA1_c09340 are separated by 202 nucleotides PGA1_c09340 and PGA1_c09350 are separated by 415 nucleotides
PGA1_c09320: PGA1_c09320 - imidazole glycerol phosphate synthase subunit HisH, at 952,556 to 953,194
_c09320
PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783
_c09330
PGA1_c09340: PGA1_c09340 - putative transcriptional regulator, AsnC family, at 953,986 to 954,225
_c09340
PGA1_c09350: PGA1_c09350 - aminotransferase class-III, at 954,641 to 955,993
_c09350
Position (kb) 953
954
955 Strain fitness (log2 ratio) -1
0
1
2 at 953.820 kb on - strand at 953.837 kb on + strand at 953.973 kb on + strand at 953.979 kb on - strand at 953.979 kb on - strand at 953.981 kb on - strand at 953.981 kb on - strand at 953.994 kb on - strand at 954.030 kb on - strand, within PGA1_c09340 at 954.040 kb on - strand, within PGA1_c09340 at 954.041 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.081 kb on + strand, within PGA1_c09340 at 954.087 kb on + strand, within PGA1_c09340 at 954.165 kb on + strand, within PGA1_c09340 at 954.173 kb on - strand, within PGA1_c09340 at 954.190 kb on - strand, within PGA1_c09340 at 954.198 kb on + strand, within PGA1_c09340 at 954.206 kb on - strand at 954.209 kb on + strand at 954.219 kb on + strand at 954.235 kb on - strand at 954.237 kb on - strand at 954.265 kb on + strand at 954.265 kb on + strand at 954.273 kb on - strand at 954.286 kb on - strand at 954.316 kb on - strand at 954.350 kb on - strand at 954.355 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.396 kb on + strand at 954.399 kb on - strand at 954.456 kb on - strand at 954.466 kb on - strand at 954.467 kb on - strand at 954.525 kb on + strand at 954.525 kb on + strand at 954.536 kb on - strand at 954.608 kb on + strand at 954.616 kb on + strand at 954.616 kb on + strand at 954.663 kb on + strand at 954.663 kb on + strand at 954.681 kb on - strand at 954.707 kb on + strand at 954.715 kb on - strand at 954.715 kb on - strand at 954.717 kb on + strand at 954.771 kb on - strand at 954.796 kb on - strand, within PGA1_c09350 at 954.981 kb on - strand, within PGA1_c09350 at 954.985 kb on + strand, within PGA1_c09350 at 955.062 kb on + strand, within PGA1_c09350 at 955.161 kb on + strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 30C remove 953,820 - +0.1 953,837 + -1.1 953,973 + +0.4 953,979 - +1.9 953,979 - +0.0 953,981 - -1.0 953,981 - -0.4 953,994 - +1.1 954,030 - PGA1_c09340 0.18 +1.1 954,040 - PGA1_c09340 0.23 +0.2 954,041 + PGA1_c09340 0.23 +0.4 954,050 + PGA1_c09340 0.27 -1.1 954,050 + PGA1_c09340 0.27 -0.5 954,050 + PGA1_c09340 0.27 -1.0 954,058 - PGA1_c09340 0.30 -0.0 954,058 - PGA1_c09340 0.30 +0.4 954,081 + PGA1_c09340 0.40 -0.4 954,087 + PGA1_c09340 0.42 -0.4 954,165 + PGA1_c09340 0.75 -1.6 954,173 - PGA1_c09340 0.78 -0.5 954,190 - PGA1_c09340 0.85 +0.9 954,198 + PGA1_c09340 0.88 -0.5 954,206 - -1.4 954,209 + -0.3 954,219 + +1.5 954,235 - +1.0 954,237 - +0.9 954,265 + +0.0 954,265 + +0.1 954,273 - -0.6 954,286 - +1.6 954,316 - -1.7 954,350 - -0.7 954,355 + +0.3 954,391 + -0.1 954,391 + -0.2 954,391 + -0.5 954,391 + +0.1 954,391 + -0.1 954,396 + -0.4 954,399 - +1.0 954,456 - -0.4 954,466 - -0.8 954,467 - -0.5 954,525 + -0.0 954,525 + -1.7 954,536 - +1.0 954,608 + +0.9 954,616 + -0.1 954,616 + +0.1 954,663 + +0.3 954,663 + +1.3 954,681 - +0.9 954,707 + -1.1 954,715 - +0.4 954,715 - +1.1 954,717 + -1.7 954,771 - -0.1 954,796 - PGA1_c09350 0.11 -0.9 954,981 - PGA1_c09350 0.25 -0.4 954,985 + PGA1_c09350 0.25 +1.4 955,062 + PGA1_c09350 0.31 +0.9 955,161 + PGA1_c09350 0.38 +0.1 955,169 - PGA1_c09350 0.39 -0.0 955,169 - PGA1_c09350 0.39 -0.4 955,169 - PGA1_c09350 0.39 -0.6
Or see this region's nucleotide sequence