Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33790

Experiment: marine broth 30C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth 30C
3,542,083	+		PGA1_c33780	0.42	-1.0
3,542,084	-		PGA1_c33780	0.42	-1.2
3,542,091	-		PGA1_c33780	0.43	+1.3
3,542,092	+		PGA1_c33780	0.43	-2.0
3,542,093	+		PGA1_c33780	0.43	+0.2
3,542,100	-		PGA1_c33780	0.44	-0.1
3,542,100	-		PGA1_c33780	0.44	+1.3
3,542,100	-		PGA1_c33780	0.44	-0.8
3,542,132	-		PGA1_c33780	0.48	+0.8
3,542,196	+		PGA1_c33780	0.57	+0.7
3,542,206	+		PGA1_c33780	0.59	-0.5
3,542,206	+		PGA1_c33780	0.59	-0.0
3,542,279	-		PGA1_c33780	0.69	+1.2
3,542,279	-		PGA1_c33780	0.69	-0.1
3,542,290	-		PGA1_c33780	0.70	+1.1
3,542,359	+		PGA1_c33780	0.80	+0.1
3,542,359	+		PGA1_c33780	0.80	-0.5
3,542,363	+		PGA1_c33780	0.80	-1.0
3,542,367	-		PGA1_c33780	0.81	-0.4
3,542,371	+		PGA1_c33780	0.82	+1.8
3,542,379	-		PGA1_c33780	0.83	-1.0
3,542,402	+		PGA1_c33780	0.86	+1.4
3,542,406	+		PGA1_c33780	0.86	+0.8
3,542,406	+		PGA1_c33780	0.86	+0.0
3,542,406	+		PGA1_c33780	0.86	+0.2
3,542,406	+		PGA1_c33780	0.86	+1.0
3,542,406	+		PGA1_c33780	0.86	-0.3
3,542,414	-		PGA1_c33780	0.88	-0.8
3,542,425	+		PGA1_c33780	0.89	+2.3
3,542,465	-				+0.2
3,542,467	+				-0.4
3,542,467	+				-1.9
3,542,467	+				-0.7
3,542,467	+				-1.4
3,542,467	+				+0.6
3,542,467	+				+0.2
3,542,467	+				+0.8
3,542,467	+				-1.2
3,542,467	+				+0.1
3,542,467	+				+0.6
3,542,467	+				+1.1
3,542,467	+				-0.2
3,542,467	+				+0.1
3,542,467	+				-0.6
3,542,475	-				+0.7
3,542,475	-				-0.3
3,542,475	-				-0.4
3,542,475	-				+0.5
3,542,475	-				+0.3
3,542,475	-				-0.5
3,542,475	-				+0.4
3,542,475	-				-1.0
3,542,475	-				+1.8
3,542,475	-				+1.3
3,542,475	-				-1.3
3,542,475	-				+1.0
3,542,475	-				+0.3
3,542,475	-				+0.4
3,542,475	-				-0.3
3,542,510	+				+0.1
3,542,510	+				-0.5
3,542,510	+				-0.1
3,542,518	-				+0.1
3,542,518	-				+1.3
3,542,518	-				+0.3
3,542,556	+				+0.3
3,542,628	+				+1.4
3,542,628	+				-0.7
3,542,636	-				-0.5
3,542,650	+				+0.1
3,542,655	+				-0.1
3,542,658	-				+0.7
3,542,663	+				-1.8
3,542,671	-				+2.3
3,542,699	+				-0.6
3,542,701	+				+0.6
3,542,701	+				+1.3
3,542,701	+				-0.7
3,542,701	+				-0.7
3,542,701	+				+0.8
3,542,701	+				+0.9
3,542,701	+				-0.0
3,542,701	+				+0.2
3,542,701	+				-0.3
3,542,701	+				+0.8
3,542,701	+				+0.1
3,542,701	+				+0.4
3,542,701	+				+0.0
3,542,701	+				-0.7
3,542,701	+				+0.5
3,542,701	+				-0.3
3,542,701	+				-0.1
3,542,701	+				+0.1
3,542,701	+				-0.4
3,542,701	+				-0.7
3,542,709	-				-0.5
3,542,709	-				+2.2
3,542,709	-				+0.1
3,542,709	-				-0.6
3,542,709	-				+0.8
3,542,709	-				-0.5
3,542,709	-				-0.0
3,542,709	-				-0.3
3,542,728	-				+0.4
3,542,751	+				+1.3
3,542,759	-				+1.9
3,542,764	-				+1.5
3,542,774	+				+0.5
3,542,787	-				+0.9
3,542,797	-				+0.4
3,542,797	-				-0.6
3,542,802	+				-1.2
3,542,802	+				-0.3
3,542,803	+				-0.5
3,542,810	-				+0.3
3,542,810	-				+1.3
3,542,810	-				+0.5
3,542,810	-				+1.5
3,542,810	-				+0.4
3,542,810	-				-1.3
3,542,810	-				+0.2
3,542,812	+				-3.1
3,542,817	+				+1.0
3,542,820	-				-0.6
3,542,863	+				-0.6
3,542,871	-				-0.1
3,542,871	-				-1.0
3,542,871	-				-0.6
3,542,947	-				-1.9
3,543,007	-				-2.9
3,543,016	+				+1.1
3,543,033	+				+0.2
3,543,050	-				+0.5
3,543,068	-				-0.8
3,543,105	+				+0.8
3,543,124	+				-1.8
3,543,124	+				-0.2
3,543,124	+				+0.7
3,543,124	+				+1.4
3,543,132	+		PGA1_c33790	0.11	-0.1
3,543,132	-		PGA1_c33790	0.11	-1.0
3,543,178	-		PGA1_c33790	0.16	+1.3
3,543,187	-		PGA1_c33790	0.17	+0.2
3,543,206	-		PGA1_c33790	0.20	+0.5
3,543,223	+		PGA1_c33790	0.22	+1.0
3,543,240	+		PGA1_c33790	0.24	+1.3
3,543,240	+		PGA1_c33790	0.24	-0.7
3,543,240	+		PGA1_c33790	0.24	-0.8
3,543,240	+		PGA1_c33790	0.24	-0.1
3,543,240	+		PGA1_c33790	0.24	+0.3
3,543,240	+		PGA1_c33790	0.24	+0.2
3,543,240	+		PGA1_c33790	0.24	+0.1
3,543,240	+		PGA1_c33790	0.24	+0.1
3,543,240	+		PGA1_c33790	0.24	-0.4
3,543,240	+		PGA1_c33790	0.24	+1.0
3,543,240	+		PGA1_c33790	0.24	-0.0
3,543,240	+		PGA1_c33790	0.24	-1.2
3,543,240	+		PGA1_c33790	0.24	-0.9
3,543,240	+		PGA1_c33790	0.24	-0.5
3,543,240	+		PGA1_c33790	0.24	+0.5
3,543,240	+		PGA1_c33790	0.24	-0.5
3,543,240	+		PGA1_c33790	0.24	-0.2
3,543,248	-		PGA1_c33790	0.25	+0.3
3,543,248	-		PGA1_c33790	0.25	-0.0
3,543,248	-		PGA1_c33790	0.25	-0.7
3,543,248	-		PGA1_c33790	0.25	+0.8
3,543,248	-		PGA1_c33790	0.25	-0.9
3,543,248	-		PGA1_c33790	0.25	+0.2
3,543,248	-		PGA1_c33790	0.25	-0.6
3,543,248	-		PGA1_c33790	0.25	-0.2
3,543,248	-		PGA1_c33790	0.25	-0.3
3,543,248	-		PGA1_c33790	0.25	-0.9
3,543,254	-		PGA1_c33790	0.26	-1.1
3,543,258	-		PGA1_c33790	0.26	-0.1
3,543,258	-		PGA1_c33790	0.26	+0.5
3,543,267	+		PGA1_c33790	0.27	-0.3
3,543,290	-		PGA1_c33790	0.30	-0.5
3,543,290	-		PGA1_c33790	0.30	+1.5
3,543,295	-		PGA1_c33790	0.31	-1.5
3,543,300	+		PGA1_c33790	0.31	-0.6
3,543,308	-		PGA1_c33790	0.32	+0.7
3,543,308	-		PGA1_c33790	0.32	+0.3
3,543,308	-		PGA1_c33790	0.32	+0.6
3,543,308	-		PGA1_c33790	0.32	-1.0
3,543,308	-		PGA1_c33790	0.32	+0.0
3,543,308	-		PGA1_c33790	0.32	-0.2
3,543,308	-		PGA1_c33790	0.32	-1.1
3,543,313	-		PGA1_c33790	0.33	-0.9
3,543,463	+		PGA1_c33790	0.51	+0.2
3,543,463	+		PGA1_c33790	0.51	-0.6
3,543,471	-		PGA1_c33790	0.52	-0.2
3,543,473	+		PGA1_c33790	0.52	-0.8
3,543,473	+		PGA1_c33790	0.52	+0.9
3,543,473	+		PGA1_c33790	0.52	+0.1
3,543,510	-		PGA1_c33790	0.57	-1.4
3,543,551	-		PGA1_c33790	0.62	-1.1
3,543,670	-		PGA1_c33790	0.76	-0.1
3,543,675	-		PGA1_c33790	0.77	-0.2
3,543,675	-		PGA1_c33790	0.77	-0.5
3,543,684	+		PGA1_c33790	0.78	+0.1
3,543,704	+		PGA1_c33790	0.80	-0.8
3,543,712	+		PGA1_c33790	0.81	-0.1
3,543,725	-		PGA1_c33790	0.83	+0.3
3,543,730	+		PGA1_c33790	0.83	+0.6
3,543,768	-		PGA1_c33790	0.88	-0.3
3,543,772	+		PGA1_c33790	0.89	-1.0
3,543,820	+				+0.3
3,543,828	+				+0.1
3,543,860	+				+0.9
3,543,901	+				+0.7
3,543,905	+				-0.0
3,543,947	+				+0.5
3,543,958	+				-0.5
3,543,958	+				-0.1
3,543,958	+				-2.0
3,543,966	-				-0.5
3,543,966	-				+1.0
3,543,966	-				+0.6
3,543,966	-				+0.3
3,543,966	-				+1.9
3,543,966	-				+1.0
3,543,966	-				+1.0
3,543,968	+				+1.1
3,543,974	-				-0.7
3,543,985	-				+0.2
3,544,014	+				+1.3
3,544,015	+				-0.5
3,544,031	-		PGA1_c33800	0.11	+0.3
3,544,048	-		PGA1_c33800	0.14	+0.4
3,544,077	+		PGA1_c33800	0.18	+1.0
3,544,082	+		PGA1_c33800	0.18	+0.9
3,544,090	+		PGA1_c33800	0.19	-0.4
3,544,090	+		PGA1_c33800	0.19	-0.6
3,544,090	+		PGA1_c33800	0.19	-1.5
3,544,090	+		PGA1_c33800	0.19	+1.0
3,544,090	+		PGA1_c33800	0.19	+0.0
3,544,090	+		PGA1_c33800	0.19	+0.4
3,544,090	+		PGA1_c33800	0.19	-1.1
3,544,090	+		PGA1_c33800	0.19	+1.9
3,544,090	-		PGA1_c33800	0.19	-0.0
3,544,090	-		PGA1_c33800	0.19	+1.2
3,544,098	-		PGA1_c33800	0.20	+0.9
3,544,107	+		PGA1_c33800	0.22	-1.4
3,544,139	+		PGA1_c33800	0.26	-0.4
3,544,139	+		PGA1_c33800	0.26	+1.2
3,544,170	+		PGA1_c33800	0.30	+0.9
3,544,178	-		PGA1_c33800	0.32	-0.1
3,544,200	+		PGA1_c33800	0.35	+1.9
3,544,241	+		PGA1_c33800	0.40	+1.6
3,544,249	-		PGA1_c33800	0.41	-0.7
3,544,249	-		PGA1_c33800	0.41	-1.8
3,544,249	-		PGA1_c33800	0.41	+0.6
3,544,252	-		PGA1_c33800	0.42	+0.1
3,544,273	-		PGA1_c33800	0.45	+0.2
3,544,273	-		PGA1_c33800	0.45	+0.8
3,544,273	-		PGA1_c33800	0.45	-0.8
3,544,278	-		PGA1_c33800	0.45	-1.4
3,544,278	-		PGA1_c33800	0.45	+0.5
3,544,285	+		PGA1_c33800	0.46	-1.4
3,544,294	+		PGA1_c33800	0.48	+1.1
3,544,312	-		PGA1_c33800	0.50	-0.6
3,544,337	+		PGA1_c33800	0.54	-1.0
3,544,392	+		PGA1_c33800	0.61	+0.4
3,544,441	-		PGA1_c33800	0.68	-0.4
3,544,444	+		PGA1_c33800	0.68	-0.2
3,544,458	+		PGA1_c33800	0.70	-0.7
3,544,459	-		PGA1_c33800	0.70	-0.2
3,544,468	+		PGA1_c33800	0.72	-1.2
3,544,502	+		PGA1_c33800	0.76	+1.0
3,544,510	-		PGA1_c33800	0.77	-0.0
3,544,525	+		PGA1_c33800	0.80	+0.3
3,544,525	+		PGA1_c33800	0.80	+1.4
3,544,533	-		PGA1_c33800	0.81	-1.9
3,544,533	-		PGA1_c33800	0.81	-1.2
3,544,556	-		PGA1_c33800	0.84	+1.0
3,544,632	+				-0.6
3,544,637	+				+0.5
3,544,637	+				-0.0
3,544,644	-				+1.5
3,544,673	+				+0.6
3,544,681	-				+0.9
3,544,696	+				+0.4
3,544,696	+				-0.2
3,544,732	-				-3.5
3,544,763	-				-1.2
3,544,770	+				-1.0
3,544,770	+				-0.7
3,544,775	+				-0.4
3,544,775	+				-1.9
3,544,783	-				+0.6
3,544,793	-				-0.1
3,544,814	-		PGA1_c33810	0.10	+0.6
3,544,846	+		PGA1_c33810	0.13	-0.1
3,544,853	+		PGA1_c33810	0.13	-2.9
3,544,853	+		PGA1_c33810	0.13	+1.0
3,544,853	+		PGA1_c33810	0.13	-1.3
3,544,861	-		PGA1_c33810	0.14	+0.4
3,544,861	-		PGA1_c33810	0.14	-1.9
3,544,861	-		PGA1_c33810	0.14	+0.6