Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33650

Experiment: marine broth 30C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth 30C
3,525,922	+		PGA1_c33640	0.63	+0.6
3,526,006	+		PGA1_c33640	0.67	-0.0
3,526,024	+		PGA1_c33640	0.68	-2.0
3,526,024	+		PGA1_c33640	0.68	+1.7
3,526,029	+		PGA1_c33640	0.68	-1.4
3,526,032	-		PGA1_c33640	0.68	+1.2
3,526,037	-		PGA1_c33640	0.69	-0.4
3,526,044	-		PGA1_c33640	0.69	+0.5
3,526,091	+		PGA1_c33640	0.71	-0.5
3,526,098	+		PGA1_c33640	0.71	-0.1
3,526,103	+		PGA1_c33640	0.72	-1.5
3,526,106	-		PGA1_c33640	0.72	+0.4
3,526,106	-		PGA1_c33640	0.72	+0.3
3,526,116	-		PGA1_c33640	0.72	+0.4
3,526,121	-		PGA1_c33640	0.72	+1.3
3,526,135	-		PGA1_c33640	0.73	+0.3
3,526,137	+		PGA1_c33640	0.73	+1.9
3,526,139	+		PGA1_c33640	0.73	+0.3
3,526,147	-		PGA1_c33640	0.74	-0.1
3,526,182	+		PGA1_c33640	0.75	-0.6
3,526,182	+		PGA1_c33640	0.75	+0.3
3,526,182	+		PGA1_c33640	0.75	-0.8
3,526,252	+		PGA1_c33640	0.78	+0.2
3,526,318	-		PGA1_c33640	0.81	+1.8
3,526,326	-		PGA1_c33640	0.82	-0.3
3,526,398	+		PGA1_c33640	0.85	+0.0
3,526,403	+		PGA1_c33640	0.85	+1.2
3,526,414	+		PGA1_c33640	0.86	-0.2
3,526,415	+		PGA1_c33640	0.86	-2.2
3,526,423	-		PGA1_c33640	0.86	-0.5
3,526,551	+				-0.2
3,526,597	-				-1.7
3,526,679	-				+1.6
3,526,725	+				-1.4
3,526,733	-				+0.3
3,526,769	+				-1.2
3,526,825	-				+0.9
3,526,853	-				+1.4
3,526,877	-				-0.1
3,526,902	-				-1.1
3,526,916	-				+1.2
3,527,006	+				+0.6
3,527,025	-				-0.5
3,527,060	-				-1.3
3,527,060	-				+0.5
3,527,078	+				+0.2
3,527,107	+		PGA1_c33650	0.11	+0.2
3,527,145	-		PGA1_c33650	0.13	-2.3
3,527,198	-		PGA1_c33650	0.16	-0.2
3,527,200	+		PGA1_c33650	0.16	-0.8
3,527,200	+		PGA1_c33650	0.16	+1.6
3,527,259	-		PGA1_c33650	0.20	-0.6
3,527,259	-		PGA1_c33650	0.20	+0.9
3,527,267	+		PGA1_c33650	0.20	-0.1
3,527,277	-		PGA1_c33650	0.21	-0.8
3,527,355	-		PGA1_c33650	0.25	+0.5
3,527,401	-		PGA1_c33650	0.28	-0.9
3,527,401	-		PGA1_c33650	0.28	-0.3
3,527,401	-		PGA1_c33650	0.28	-0.5
3,527,405	+		PGA1_c33650	0.28	-0.6
3,527,405	+		PGA1_c33650	0.28	-1.1
3,527,405	+		PGA1_c33650	0.28	-0.9
3,527,405	+		PGA1_c33650	0.28	+0.2
3,527,405	+		PGA1_c33650	0.28	-0.5
3,527,405	+		PGA1_c33650	0.28	-0.7
3,527,405	+		PGA1_c33650	0.28	+0.1
3,527,406	-		PGA1_c33650	0.28	-0.5
3,527,407	+		PGA1_c33650	0.28	+0.8
3,527,407	+		PGA1_c33650	0.28	-0.7
3,527,413	+		PGA1_c33650	0.28	+0.8
3,527,413	-		PGA1_c33650	0.28	+0.4
3,527,413	-		PGA1_c33650	0.28	+0.6
3,527,413	-		PGA1_c33650	0.28	+1.3
3,527,415	+		PGA1_c33650	0.28	+0.1
3,527,415	+		PGA1_c33650	0.28	-0.3
3,527,415	+		PGA1_c33650	0.28	-0.5
3,527,415	+		PGA1_c33650	0.28	-0.1
3,527,421	-		PGA1_c33650	0.29	+0.8
3,527,423	-		PGA1_c33650	0.29	-0.3
3,527,423	-		PGA1_c33650	0.29	+1.3
3,527,423	-		PGA1_c33650	0.29	-1.7
3,527,423	-		PGA1_c33650	0.29	-0.4
3,527,449	-		PGA1_c33650	0.30	+0.3
3,527,486	-		PGA1_c33650	0.32	-0.5
3,527,486	-		PGA1_c33650	0.32	+0.3
3,527,537	+		PGA1_c33650	0.35	+0.3
3,527,571	-		PGA1_c33650	0.37	-1.4
3,527,582	+		PGA1_c33650	0.38	-2.8
3,527,590	-		PGA1_c33650	0.38	-0.3
3,527,595	-		PGA1_c33650	0.38	+0.2
3,527,627	+		PGA1_c33650	0.40	-1.3
3,527,628	+		PGA1_c33650	0.40	+0.3
3,527,644	+		PGA1_c33650	0.41	+1.4
3,527,655	+		PGA1_c33650	0.42	-1.0
3,527,655	+		PGA1_c33650	0.42	+2.3
3,527,655	+		PGA1_c33650	0.42	-0.6
3,527,663	-		PGA1_c33650	0.42	-0.6
3,527,663	-		PGA1_c33650	0.42	-0.2
3,527,663	-		PGA1_c33650	0.42	-0.7
3,527,663	-		PGA1_c33650	0.42	-0.8
3,527,710	+		PGA1_c33650	0.45	-0.0
3,527,734	+		PGA1_c33650	0.46	-0.9
3,527,749	-		PGA1_c33650	0.47	+0.4
3,527,806	+		PGA1_c33650	0.50	+0.2
3,527,813	+		PGA1_c33650	0.50	+0.3
3,527,814	-		PGA1_c33650	0.50	-1.0
3,527,824	+		PGA1_c33650	0.51	-0.4
3,527,849	-		PGA1_c33650	0.52	+0.2
3,527,850	-		PGA1_c33650	0.52	+1.0
3,527,855	-		PGA1_c33650	0.53	-2.6
3,527,855	-		PGA1_c33650	0.53	+0.5
3,527,873	+		PGA1_c33650	0.54	+0.2
3,527,881	-		PGA1_c33650	0.54	+0.0
3,527,881	-		PGA1_c33650	0.54	-0.2
3,527,881	-		PGA1_c33650	0.54	-1.3
3,527,881	-		PGA1_c33650	0.54	-0.3
3,527,881	-		PGA1_c33650	0.54	-0.3
3,527,912	+		PGA1_c33650	0.56	-0.1
3,527,933	-		PGA1_c33650	0.57	+1.3
3,527,935	+		PGA1_c33650	0.57	+0.8
3,527,943	+		PGA1_c33650	0.57	+1.7
3,528,001	+		PGA1_c33650	0.61	-0.6
3,528,036	-		PGA1_c33650	0.63	-0.1
3,528,053	+		PGA1_c33650	0.63	-1.7
3,528,114	+		PGA1_c33650	0.67	+1.7
3,528,114	+		PGA1_c33650	0.67	-1.5
3,528,114	+		PGA1_c33650	0.67	+0.2
3,528,122	-		PGA1_c33650	0.67	-1.2
3,528,122	-		PGA1_c33650	0.67	-0.9
3,528,122	-		PGA1_c33650	0.67	+1.0
3,528,122	-		PGA1_c33650	0.67	-0.6
3,528,122	-		PGA1_c33650	0.67	-0.1
3,528,142	+		PGA1_c33650	0.68	-0.7
3,528,188	+		PGA1_c33650	0.71	-0.2
3,528,242	+		PGA1_c33650	0.74	-0.4
3,528,243	+		PGA1_c33650	0.74	+0.3
3,528,250	-		PGA1_c33650	0.74	-0.6
3,528,291	+		PGA1_c33650	0.77	+0.3
3,528,310	+		PGA1_c33650	0.78	+0.1
3,528,319	+		PGA1_c33650	0.78	-0.3
3,528,342	-		PGA1_c33650	0.79	-0.5
3,528,365	+		PGA1_c33650	0.81	-0.3
3,528,365	+		PGA1_c33650	0.81	+1.3
3,528,365	+		PGA1_c33650	0.81	+1.0
3,528,365	+		PGA1_c33650	0.81	-0.3
3,528,365	+		PGA1_c33650	0.81	+0.0
3,528,370	+		PGA1_c33650	0.81	-0.0
3,528,373	-		PGA1_c33650	0.81	-0.2
3,528,373	-		PGA1_c33650	0.81	-0.4
3,528,373	-		PGA1_c33650	0.81	-0.7
3,528,373	-		PGA1_c33650	0.81	+1.9
3,528,373	-		PGA1_c33650	0.81	+0.1
3,528,543	+				+0.9
3,528,546	-				+1.8
3,528,546	-				+1.3
3,528,546	-				+0.8
3,528,557	-				+0.0
3,528,562	-				+0.7
3,528,584	+				-0.6
3,528,584	+				-1.1
3,528,592	-				-0.8
3,528,592	-				+0.1
3,528,592	-				-2.0
3,528,592	-				-0.1
3,528,592	-				+1.8
3,528,598	+				-0.3
3,528,634	-				+0.5
3,528,643	+				+0.7
3,528,644	+				-0.1
3,528,644	+				+0.9
3,528,644	+				-0.2
3,528,652	-				-0.5
3,528,652	-				+0.3
3,528,652	-				+0.6
3,528,652	-				-2.1
3,528,652	-				+0.6
3,528,675	+				-1.7
3,528,727	+				+0.6
3,528,730	-				-0.3
3,528,740	-				-1.0
3,528,740	-				+0.2
3,528,740	-				+0.4
3,528,771	-				-0.5
3,528,788	+				-1.1
3,528,788	+				-0.7
3,528,793	+				-0.6
3,528,796	-		PGA1_c33660	0.11	+1.3
3,528,798	+		PGA1_c33660	0.11	-0.5
3,528,806	-		PGA1_c33660	0.15	-0.0
3,528,806	-		PGA1_c33660	0.15	-0.5
3,528,806	-		PGA1_c33660	0.15	+1.0
3,528,806	-		PGA1_c33660	0.15	+0.1
3,528,806	-		PGA1_c33660	0.15	+0.2
3,528,809	-		PGA1_c33660	0.16	-0.7
3,528,809	-		PGA1_c33660	0.16	+0.8
3,528,849	-		PGA1_c33660	0.35	+0.6
3,528,878	+		PGA1_c33660	0.48	+0.8
3,528,881	+		PGA1_c33660	0.49	+0.5
3,528,886	+		PGA1_c33660	0.52	+0.7
3,528,949	-		PGA1_c33660	0.80	-1.0
3,528,951	+		PGA1_c33660	0.81	-0.7
3,528,967	+		PGA1_c33660	0.89	-0.9
3,528,978	+				-0.1
3,528,978	+				+1.3
3,528,980	-				-0.6
3,528,986	+				+0.3
3,528,986	-				+1.2
3,529,030	+				-0.7
3,529,038	-				+0.0
3,529,057	-				+0.4
3,529,058	+				+0.8
3,529,075	-				-2.0
3,529,075	-				-0.4
3,529,075	-				+0.8
3,529,082	-				+0.2
3,529,098	+				-0.1
3,529,111	-				+0.0
3,529,116	-				-1.3
3,529,129	-				-0.7
3,529,156	+				-0.6
3,529,175	+				+0.1
3,529,191	-				+0.4
3,529,192	+				+0.4
3,529,192	+				+0.2
3,529,197	+				-0.2
3,529,200	-				-0.7
3,529,200	-				-0.6
3,529,200	-				+0.8
3,529,210	-				+0.8
3,529,254	-				-1.0
3,529,256	+				+1.4
3,529,256	+				-0.5
3,529,256	+				-0.3
3,529,264	-				+0.2
3,529,264	-				-1.4
3,529,264	-				+1.6
3,529,264	-				-0.7
3,529,286	-				+0.2
3,529,300	-				-2.0
3,529,302	+				-0.1
3,529,310	-				-0.0
3,529,365	-				-0.2
3,529,384	+				+0.9
3,529,392	-				+0.6
3,529,419	-				+1.0
3,529,448	+				-2.7
3,529,448	+				+0.3
3,529,448	+				+0.2
3,529,456	-				+0.3
3,529,456	-				+0.4