Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12440 and BBR_RS20695 are separated by 42 nucleotides BBR_RS20695 and BBR_RS12445 are separated by 433 nucleotides BBR_RS12445 and BBR_RS12450 are separated by 168 nucleotides
BBR_RS12440: BBR_RS12440 - Permease of ABC transporter system, at 539,673 to 541,463
_RS12440
BBR_RS20695: BBR_RS20695 - hypothetical protein, at 541,506 to 541,820
_RS20695
BBR_RS12445: BBR_RS12445 - 50S ribosomal protein L19, at 542,254 to 542,619
_RS12445
BBR_RS12450: BBR_RS12450 - signal peptidase I, at 542,788 to 543,711
_RS12450
Position (kb) 541
542 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 540.510 kb on - strand, within BBR_RS12440 at 540.532 kb on + strand, within BBR_RS12440 at 540.536 kb on - strand, within BBR_RS12440 at 540.547 kb on + strand, within BBR_RS12440 at 540.562 kb on + strand, within BBR_RS12440 at 540.565 kb on - strand, within BBR_RS12440 at 540.565 kb on - strand, within BBR_RS12440 at 540.570 kb on + strand, within BBR_RS12440 at 540.575 kb on - strand, within BBR_RS12440 at 540.575 kb on - strand, within BBR_RS12440 at 540.596 kb on - strand, within BBR_RS12440 at 540.631 kb on + strand, within BBR_RS12440 at 540.654 kb on - strand, within BBR_RS12440 at 540.654 kb on - strand, within BBR_RS12440 at 540.654 kb on - strand, within BBR_RS12440 at 540.677 kb on + strand, within BBR_RS12440 at 540.725 kb on + strand, within BBR_RS12440 at 540.747 kb on - strand, within BBR_RS12440 at 540.749 kb on + strand, within BBR_RS12440 at 540.749 kb on + strand, within BBR_RS12440 at 540.749 kb on + strand, within BBR_RS12440 at 540.752 kb on - strand, within BBR_RS12440 at 540.757 kb on - strand, within BBR_RS12440 at 540.794 kb on + strand, within BBR_RS12440 at 540.804 kb on + strand, within BBR_RS12440 at 540.804 kb on + strand, within BBR_RS12440 at 540.804 kb on + strand, within BBR_RS12440 at 540.836 kb on - strand, within BBR_RS12440 at 540.846 kb on - strand, within BBR_RS12440 at 540.876 kb on - strand, within BBR_RS12440 at 540.887 kb on + strand, within BBR_RS12440 at 540.887 kb on + strand, within BBR_RS12440 at 540.887 kb on + strand, within BBR_RS12440 at 540.893 kb on + strand, within BBR_RS12440 at 540.893 kb on + strand, within BBR_RS12440 at 540.893 kb on + strand, within BBR_RS12440 at 540.895 kb on - strand, within BBR_RS12440 at 540.901 kb on - strand, within BBR_RS12440 at 540.901 kb on - strand, within BBR_RS12440 at 540.901 kb on - strand, within BBR_RS12440 at 540.910 kb on + strand, within BBR_RS12440 at 540.929 kb on + strand, within BBR_RS12440 at 540.937 kb on - strand, within BBR_RS12440 at 540.945 kb on - strand, within BBR_RS12440 at 540.949 kb on - strand, within BBR_RS12440 at 540.960 kb on + strand, within BBR_RS12440 at 541.019 kb on + strand, within BBR_RS12440 at 541.025 kb on - strand, within BBR_RS12440 at 541.027 kb on - strand, within BBR_RS12440 at 541.097 kb on - strand, within BBR_RS12440 at 541.137 kb on - strand, within BBR_RS12440 at 541.152 kb on + strand, within BBR_RS12440 at 541.162 kb on + strand, within BBR_RS12440 at 541.172 kb on - strand, within BBR_RS12440 at 541.200 kb on + strand, within BBR_RS12440 at 541.219 kb on + strand, within BBR_RS12440 at 541.241 kb on + strand, within BBR_RS12440 at 541.249 kb on - strand, within BBR_RS12440 at 541.260 kb on + strand, within BBR_RS12440 at 541.268 kb on - strand, within BBR_RS12440 at 541.268 kb on - strand, within BBR_RS12440 at 541.283 kb on + strand, within BBR_RS12440 at 541.347 kb on - strand at 541.364 kb on + strand at 541.371 kb on + strand at 541.379 kb on + strand at 541.383 kb on + strand at 541.396 kb on - strand at 541.430 kb on - strand at 541.430 kb on - strand at 541.470 kb on + strand at 541.570 kb on - strand, within BBR_RS20695 at 541.661 kb on + strand, within BBR_RS20695 at 541.689 kb on + strand, within BBR_RS20695 at 541.710 kb on + strand, within BBR_RS20695 at 541.711 kb on - strand, within BBR_RS20695 at 541.783 kb on + strand, within BBR_RS20695 at 541.847 kb on - strand at 541.864 kb on + strand at 541.888 kb on + strand at 541.889 kb on + strand at 541.930 kb on + strand at 541.932 kb on - strand at 541.941 kb on + strand at 541.941 kb on + strand at 541.948 kb on + strand at 541.968 kb on + strand at 542.011 kb on - strand at 542.717 kb on - strand at 542.753 kb on + strand at 542.760 kb on - strand at 542.760 kb on - strand at 542.771 kb on - strand at 542.779 kb on + strand at 542.789 kb on + strand at 542.796 kb on - strand at 542.796 kb on - strand at 542.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day3 remove 540,510 - BBR_RS12440 0.47 +0.2 540,532 + BBR_RS12440 0.48 -2.2 540,536 - BBR_RS12440 0.48 +1.9 540,547 + BBR_RS12440 0.49 -1.9 540,562 + BBR_RS12440 0.50 -2.3 540,565 - BBR_RS12440 0.50 +0.8 540,565 - BBR_RS12440 0.50 -3.0 540,570 + BBR_RS12440 0.50 +3.2 540,575 - BBR_RS12440 0.50 +3.0 540,575 - BBR_RS12440 0.50 -0.2 540,596 - BBR_RS12440 0.52 +1.1 540,631 + BBR_RS12440 0.53 +1.5 540,654 - BBR_RS12440 0.55 -2.0 540,654 - BBR_RS12440 0.55 +2.0 540,654 - BBR_RS12440 0.55 +2.2 540,677 + BBR_RS12440 0.56 +1.1 540,725 + BBR_RS12440 0.59 -1.2 540,747 - BBR_RS12440 0.60 +0.5 540,749 + BBR_RS12440 0.60 -2.0 540,749 + BBR_RS12440 0.60 +0.7 540,749 + BBR_RS12440 0.60 +0.7 540,752 - BBR_RS12440 0.60 -0.2 540,757 - BBR_RS12440 0.61 +0.6 540,794 + BBR_RS12440 0.63 +1.2 540,804 + BBR_RS12440 0.63 +1.3 540,804 + BBR_RS12440 0.63 -2.1 540,804 + BBR_RS12440 0.63 -2.3 540,836 - BBR_RS12440 0.65 +0.6 540,846 - BBR_RS12440 0.65 +1.4 540,876 - BBR_RS12440 0.67 +1.4 540,887 + BBR_RS12440 0.68 +1.6 540,887 + BBR_RS12440 0.68 +2.3 540,887 + BBR_RS12440 0.68 -1.0 540,893 + BBR_RS12440 0.68 +1.0 540,893 + BBR_RS12440 0.68 +1.2 540,893 + BBR_RS12440 0.68 -2.2 540,895 - BBR_RS12440 0.68 +1.0 540,901 - BBR_RS12440 0.69 -1.2 540,901 - BBR_RS12440 0.69 +2.5 540,901 - BBR_RS12440 0.69 -2.5 540,910 + BBR_RS12440 0.69 -1.8 540,929 + BBR_RS12440 0.70 -0.7 540,937 - BBR_RS12440 0.71 -2.1 540,945 - BBR_RS12440 0.71 +1.0 540,949 - BBR_RS12440 0.71 +2.5 540,960 + BBR_RS12440 0.72 +1.5 541,019 + BBR_RS12440 0.75 +1.2 541,025 - BBR_RS12440 0.75 -1.0 541,027 - BBR_RS12440 0.76 +1.3 541,097 - BBR_RS12440 0.80 +1.0 541,137 - BBR_RS12440 0.82 +1.3 541,152 + BBR_RS12440 0.83 +2.3 541,162 + BBR_RS12440 0.83 -2.2 541,172 - BBR_RS12440 0.84 -3.1 541,200 + BBR_RS12440 0.85 +2.2 541,219 + BBR_RS12440 0.86 -3.4 541,241 + BBR_RS12440 0.88 -1.7 541,249 - BBR_RS12440 0.88 +2.4 541,260 + BBR_RS12440 0.89 -3.1 541,268 - BBR_RS12440 0.89 -2.4 541,268 - BBR_RS12440 0.89 +0.6 541,283 + BBR_RS12440 0.90 +0.6 541,347 - -2.5 541,364 + -1.6 541,371 + -1.2 541,379 + -0.5 541,383 + -2.3 541,396 - +2.5 541,430 - +2.3 541,430 - -2.1 541,470 + -2.3 541,570 - BBR_RS20695 0.20 +2.9 541,661 + BBR_RS20695 0.49 +2.5 541,689 + BBR_RS20695 0.58 -2.3 541,710 + BBR_RS20695 0.65 -2.5 541,711 - BBR_RS20695 0.65 -0.6 541,783 + BBR_RS20695 0.88 -2.4 541,847 - +1.7 541,864 + +1.2 541,888 + +2.1 541,889 + -1.2 541,930 + -0.1 541,932 - -1.6 541,941 + +1.4 541,941 + +3.4 541,948 + -4.0 541,968 + -0.7 542,011 - -1.0 542,717 - +1.2 542,753 + -2.0 542,760 - +0.9 542,760 - +0.4 542,771 - +0.9 542,779 + +1.1 542,789 + -2.0 542,796 - -3.2 542,796 - -0.5 542,798 + +1.5
Or see this region's nucleotide sequence