Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18620

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse1; day3
1,962,610	+		BBR_RS18615	0.56	+1.7
1,962,610	+		BBR_RS18615	0.56	-2.2
1,962,626	+		BBR_RS18615	0.57	+2.3
1,962,664	-		BBR_RS18615	0.58	+1.4
1,962,672	-		BBR_RS18615	0.59	+2.6
1,962,697	-		BBR_RS18615	0.60	-2.7
1,962,708	+		BBR_RS18615	0.60	-1.7
1,962,714	-		BBR_RS18615	0.61	+1.5
1,962,716	-		BBR_RS18615	0.61	+1.8
1,962,716	-		BBR_RS18615	0.61	-3.0
1,962,716	-		BBR_RS18615	0.61	-1.4
1,962,716	-		BBR_RS18615	0.61	+1.4
1,962,719	+		BBR_RS18615	0.61	-2.3
1,962,765	+		BBR_RS18615	0.63	-2.9
1,962,765	+		BBR_RS18615	0.63	+0.5
1,962,770	+		BBR_RS18615	0.63	-2.5
1,962,778	+		BBR_RS18615	0.63	-0.5
1,962,790	+		BBR_RS18615	0.64	+0.3
1,962,793	-		BBR_RS18615	0.64	-1.9
1,962,821	+		BBR_RS18615	0.65	-1.5
1,962,862	-		BBR_RS18615	0.67	+0.0
1,962,874	-		BBR_RS18615	0.68	+2.6
1,962,888	+		BBR_RS18615	0.68	-0.3
1,962,919	+		BBR_RS18615	0.70	+0.9
1,962,939	+		BBR_RS18615	0.71	+1.5
1,962,943	-		BBR_RS18615	0.71	+3.7
1,962,943	-		BBR_RS18615	0.71	-3.1
1,962,945	-		BBR_RS18615	0.71	+1.6
1,962,972	+		BBR_RS18615	0.72	-2.2
1,962,977	+		BBR_RS18615	0.73	+1.5
1,962,977	+		BBR_RS18615	0.73	+0.2
1,962,990	-		BBR_RS18615	0.73	-1.0
1,963,008	+		BBR_RS18615	0.74	+0.4
1,963,011	-		BBR_RS18615	0.74	-2.3
1,963,011	-		BBR_RS18615	0.74	-2.0
1,963,017	-		BBR_RS18615	0.74	+1.7
1,963,043	-		BBR_RS18615	0.76	+2.4
1,963,112	-		BBR_RS18615	0.79	+1.4
1,963,123	+		BBR_RS18615	0.79	-1.4
1,963,169	+		BBR_RS18615	0.81	-2.0
1,963,181	+		BBR_RS18615	0.82	+0.9
1,963,183	+		BBR_RS18615	0.82	-1.0
1,963,191	-		BBR_RS18615	0.82	-2.7
1,963,270	-		BBR_RS18615	0.86	+2.2
1,963,280	-		BBR_RS18615	0.86	+1.9
1,963,293	+		BBR_RS18615	0.87	-0.1
1,963,293	+		BBR_RS18615	0.87	+0.8
1,963,293	+		BBR_RS18615	0.87	-0.5
1,963,301	-		BBR_RS18615	0.87	-1.9
1,963,326	+		BBR_RS18615	0.88	+0.1
1,963,351	+		BBR_RS18615	0.90	+1.0
1,963,406	+				+1.7
1,963,474	+				+1.0
1,963,486	+				-1.8
1,963,489	-				-1.6
1,963,494	-				+0.6
1,963,519	-				-2.0
1,963,520	+				-2.6
1,963,535	-				-2.7
1,963,535	-				-1.6
1,963,545	+				+0.8
1,963,557	-				+1.2
1,963,559	+				+1.3
1,963,566	+				-2.4
1,963,566	+				+2.5
1,963,566	+				-1.9
1,963,574	-				-2.4
1,963,595	+				-2.8
1,963,642	+				-2.2
1,963,642	+				+1.3
1,963,664	+		BBR_RS18620	0.12	+1.1
1,963,672	-		BBR_RS18620	0.13	+0.9
1,963,758	+		BBR_RS18620	0.26	+0.6
1,963,759	-		BBR_RS18620	0.27	-3.3
1,963,777	+		BBR_RS18620	0.29	+1.6
1,963,785	-		BBR_RS18620	0.31	-3.0
1,963,790	-		BBR_RS18620	0.31	-2.7
1,963,847	-		BBR_RS18620	0.40	+0.5
1,963,852	+		BBR_RS18620	0.41	-2.6
1,963,860	-		BBR_RS18620	0.42	-1.7
1,963,860	-		BBR_RS18620	0.42	-2.1
1,963,860	-		BBR_RS18620	0.42	-0.1
1,963,879	-		BBR_RS18620	0.45	-2.2
1,963,879	-		BBR_RS18620	0.45	-1.6
1,963,879	-		BBR_RS18620	0.45	-2.2
1,963,886	+		BBR_RS18620	0.47	-1.3
1,963,997	-		BBR_RS18620	0.64	-1.9
1,963,997	-		BBR_RS18620	0.64	+2.7
1,964,080	-		BBR_RS18620	0.77	-3.6
1,964,084	+		BBR_RS18620	0.78	-1.8
1,964,084	+		BBR_RS18620	0.78	-1.8
1,964,144	-		BBR_RS18620	0.87	+1.9
1,964,144	-		BBR_RS18620	0.87	-1.8
1,964,192	+				+1.9
1,964,192	+				-2.0
1,964,192	-				-1.5
1,964,200	-				+0.5
1,964,200	-				+1.1
1,964,200	-				-1.2
1,964,202	+				-2.3
1,964,202	+				-2.0
1,964,210	-				-1.1
1,964,220	-				+1.1
1,964,230	+				-0.8
1,964,236	-				+2.1
1,964,248	-				-1.5
1,964,250	+				+2.4
1,964,250	+				+0.4
1,964,250	+				+1.1
1,964,280	-				+1.4
1,964,282	-				+0.7
1,964,300	+				-1.5
1,964,329	+				+1.3
1,964,337	-				+0.5
1,964,349	-				-2.4
1,964,350	+				+1.2
1,964,358	-				-1.3
1,964,382	-				-2.7
1,964,451	+		BBR_RS18625	0.12	-1.5
1,964,451	+		BBR_RS18625	0.12	-3.3
1,964,468	+		BBR_RS18625	0.13	-2.0
1,964,476	-		BBR_RS18625	0.14	+1.9
1,964,480	+		BBR_RS18625	0.14	+2.3
1,964,496	-		BBR_RS18625	0.15	+0.6
1,964,496	-		BBR_RS18625	0.15	+0.5
1,964,531	-		BBR_RS18625	0.17	-3.7
1,964,541	-		BBR_RS18625	0.17	+0.6
1,964,541	-		BBR_RS18625	0.17	-2.6
1,964,543	+		BBR_RS18625	0.18	-1.5
1,964,543	+		BBR_RS18625	0.18	-1.2
1,964,551	-		BBR_RS18625	0.18	+1.1
1,964,551	-		BBR_RS18625	0.18	+0.2
1,964,556	+		BBR_RS18625	0.18	+1.5
1,964,559	-		BBR_RS18625	0.18	+2.2
1,964,559	-		BBR_RS18625	0.18	+0.6
1,964,564	-		BBR_RS18625	0.19	-2.9
1,964,565	-		BBR_RS18625	0.19	+1.5
1,964,565	-		BBR_RS18625	0.19	+1.6
1,964,571	+		BBR_RS18625	0.19	+0.1
1,964,575	+		BBR_RS18625	0.19	-1.2
1,964,581	+		BBR_RS18625	0.20	-1.6
1,964,589	-		BBR_RS18625	0.20	+1.3
1,964,614	+		BBR_RS18625	0.22	+0.4
1,964,614	+		BBR_RS18625	0.22	-1.6
1,964,622	-		BBR_RS18625	0.22	-2.1
1,964,623	+		BBR_RS18625	0.22	+2.2
1,964,662	+		BBR_RS18625	0.24	+0.5
1,964,662	+		BBR_RS18625	0.24	+0.2
1,964,700	-		BBR_RS18625	0.27	+0.1
1,964,701	-		BBR_RS18625	0.27	+0.8
1,964,740	+		BBR_RS18625	0.29	-1.6
1,964,751	+		BBR_RS18625	0.30	-2.0
1,964,759	-		BBR_RS18625	0.30	-2.1
1,964,787	+		BBR_RS18625	0.32	-2.2
1,964,787	+		BBR_RS18625	0.32	-2.7
1,964,787	+		BBR_RS18625	0.32	+1.0
1,964,795	-		BBR_RS18625	0.32	+1.3
1,964,809	+		BBR_RS18625	0.33	+1.1
1,964,852	+		BBR_RS18625	0.35	+2.4
1,964,871	+		BBR_RS18625	0.37	-2.4
1,964,907	+		BBR_RS18625	0.39	+0.3
1,964,917	-		BBR_RS18625	0.39	-2.5
1,964,924	-		BBR_RS18625	0.40	+1.5
1,964,934	-		BBR_RS18625	0.40	-1.4
1,964,964	-		BBR_RS18625	0.42	-3.0
1,964,964	-		BBR_RS18625	0.42	+2.2
1,964,977	+		BBR_RS18625	0.43	+1.6
1,964,988	+		BBR_RS18625	0.43	+1.6
1,964,996	-		BBR_RS18625	0.44	-1.7
1,965,002	+		BBR_RS18625	0.44	-2.1
1,965,002	+		BBR_RS18625	0.44	+1.2
1,965,003	+		BBR_RS18625	0.44	+1.8
1,965,004	+		BBR_RS18625	0.44	+0.8
1,965,021	+		BBR_RS18625	0.45	+0.8
1,965,036	+		BBR_RS18625	0.46	+2.0
1,965,041	+		BBR_RS18625	0.46	-0.3
1,965,041	+		BBR_RS18625	0.46	-3.5
1,965,041	+		BBR_RS18625	0.46	-3.1
1,965,078	+		BBR_RS18625	0.49	-2.6
1,965,086	+		BBR_RS18625	0.49	-0.1
1,965,086	+		BBR_RS18625	0.49	-2.8
1,965,090	+		BBR_RS18625	0.49	+1.0
1,965,093	-		BBR_RS18625	0.49	-1.8
1,965,116	-		BBR_RS18625	0.51	-1.1
1,965,158	-		BBR_RS18625	0.53	-2.2
1,965,162	+		BBR_RS18625	0.53	+0.4
1,965,162	+		BBR_RS18625	0.53	-0.4
1,965,164	+		BBR_RS18625	0.54	-1.1
1,965,170	-		BBR_RS18625	0.54	-2.4
1,965,196	+		BBR_RS18625	0.55	-0.9