Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13720

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13710 and BBR_RS13715 are separated by 56 nucleotidesBBR_RS13715 and BBR_RS13720 are separated by 105 nucleotidesBBR_RS13720 and BBR_RS13725 are separated by 82 nucleotides BBR_RS13710: BBR_RS13710 - PHP domain-containing protein, at 848,925 to 849,818 _RS13710 BBR_RS13715: BBR_RS13715 - DUF3107 domain-containing protein, at 849,875 to 850,099 _RS13715 BBR_RS13720: BBR_RS13720 - hypothetical protein, at 850,205 to 851,836 _RS13720 BBR_RS13725: BBR_RS13725 - ATP-dependent helicase, at 851,919 to 853,466 _RS13725 Position (kb) 850 851 852Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 849.271 kb on - strand, within BBR_RS13710at 849.305 kb on + strand, within BBR_RS13710at 849.305 kb on + strand, within BBR_RS13710at 849.338 kb on + strand, within BBR_RS13710at 849.338 kb on + strand, within BBR_RS13710at 849.346 kb on - strand, within BBR_RS13710at 849.346 kb on - strand, within BBR_RS13710at 849.346 kb on - strand, within BBR_RS13710at 849.358 kb on + strand, within BBR_RS13710at 849.358 kb on + strand, within BBR_RS13710at 849.367 kb on - strand, within BBR_RS13710at 849.369 kb on - strand, within BBR_RS13710at 849.369 kb on - strand, within BBR_RS13710at 849.370 kb on - strand, within BBR_RS13710at 849.476 kb on + strand, within BBR_RS13710at 849.476 kb on + strand, within BBR_RS13710at 849.531 kb on - strand, within BBR_RS13710at 849.549 kb on + strand, within BBR_RS13710at 849.617 kb on - strand, within BBR_RS13710at 849.619 kb on + strand, within BBR_RS13710at 849.627 kb on + strand, within BBR_RS13710at 849.646 kb on + strand, within BBR_RS13710at 849.654 kb on - strand, within BBR_RS13710at 849.664 kb on - strand, within BBR_RS13710at 849.682 kb on + strand, within BBR_RS13710at 849.717 kb on - strand, within BBR_RS13710at 849.718 kb on + strand, within BBR_RS13710at 849.726 kb on - strand, within BBR_RS13710at 849.812 kb on - strandat 849.818 kb on + strandat 849.819 kb on + strandat 849.848 kb on + strandat 849.856 kb on - strandat 849.863 kb on - strandat 849.872 kb on + strandat 849.872 kb on + strandat 849.874 kb on + strandat 849.882 kb on - strandat 849.929 kb on + strand, within BBR_RS13715at 849.937 kb on - strand, within BBR_RS13715at 849.944 kb on - strand, within BBR_RS13715at 849.999 kb on + strand, within BBR_RS13715at 850.006 kb on - strand, within BBR_RS13715at 850.055 kb on - strand, within BBR_RS13715at 850.105 kb on - strandat 850.115 kb on - strandat 850.117 kb on - strandat 850.174 kb on - strandat 850.253 kb on - strandat 850.258 kb on - strandat 850.277 kb on - strandat 850.277 kb on - strandat 850.277 kb on - strandat 850.300 kb on - strandat 850.300 kb on - strandat 850.316 kb on - strandat 850.362 kb on + strandat 850.401 kb on + strand, within BBR_RS13720at 850.401 kb on + strand, within BBR_RS13720at 850.401 kb on + strand, within BBR_RS13720at 850.409 kb on - strand, within BBR_RS13720at 850.409 kb on - strand, within BBR_RS13720at 850.495 kb on - strand, within BBR_RS13720at 850.540 kb on + strand, within BBR_RS13720at 850.545 kb on + strand, within BBR_RS13720at 850.553 kb on - strand, within BBR_RS13720at 850.553 kb on - strand, within BBR_RS13720at 850.602 kb on + strand, within BBR_RS13720at 850.602 kb on + strand, within BBR_RS13720at 850.604 kb on - strand, within BBR_RS13720at 850.604 kb on - strand, within BBR_RS13720at 850.681 kb on + strand, within BBR_RS13720at 850.689 kb on - strand, within BBR_RS13720at 850.689 kb on - strand, within BBR_RS13720at 850.701 kb on - strand, within BBR_RS13720at 850.701 kb on - strand, within BBR_RS13720at 850.724 kb on - strand, within BBR_RS13720at 850.806 kb on + strand, within BBR_RS13720at 850.806 kb on + strand, within BBR_RS13720at 850.851 kb on + strand, within BBR_RS13720at 850.945 kb on + strand, within BBR_RS13720at 851.839 kb on + strandat 851.844 kb on - strandat 851.847 kb on - strandat 851.855 kb on - strandat 851.866 kb on - strandat 851.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day3
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849,271 - BBR_RS13710 0.39 +0.7
849,305 + BBR_RS13710 0.43 -2.5
849,305 + BBR_RS13710 0.43 -0.6
849,338 + BBR_RS13710 0.46 +0.7
849,338 + BBR_RS13710 0.46 +0.9
849,346 - BBR_RS13710 0.47 +0.8
849,346 - BBR_RS13710 0.47 -2.2
849,346 - BBR_RS13710 0.47 +1.8
849,358 + BBR_RS13710 0.48 +2.2
849,358 + BBR_RS13710 0.48 +0.7
849,367 - BBR_RS13710 0.49 -1.7
849,369 - BBR_RS13710 0.50 -0.9
849,369 - BBR_RS13710 0.50 -2.4
849,370 - BBR_RS13710 0.50 -1.3
849,476 + BBR_RS13710 0.62 +0.6
849,476 + BBR_RS13710 0.62 +0.3
849,531 - BBR_RS13710 0.68 -2.5
849,549 + BBR_RS13710 0.70 -0.4
849,617 - BBR_RS13710 0.77 -2.9
849,619 + BBR_RS13710 0.78 +0.8
849,627 + BBR_RS13710 0.79 +1.7
849,646 + BBR_RS13710 0.81 -3.6
849,654 - BBR_RS13710 0.82 +1.7
849,664 - BBR_RS13710 0.83 -0.6
849,682 + BBR_RS13710 0.85 -1.9
849,717 - BBR_RS13710 0.89 +1.0
849,718 + BBR_RS13710 0.89 +2.1
849,726 - BBR_RS13710 0.90 -1.1
849,812 - +1.9
849,818 + +0.3
849,819 + -2.0
849,848 + +2.3
849,856 - +1.2
849,863 - -0.4
849,872 + +2.2
849,872 + +2.8
849,874 + -0.9
849,882 - -2.1
849,929 + BBR_RS13715 0.24 -2.3
849,937 - BBR_RS13715 0.28 +1.9
849,944 - BBR_RS13715 0.31 +0.7
849,999 + BBR_RS13715 0.55 -2.9
850,006 - BBR_RS13715 0.58 -3.3
850,055 - BBR_RS13715 0.80 -1.2
850,105 - +1.6
850,115 - +0.7
850,117 - -2.7
850,174 - -2.2
850,253 - +1.0
850,258 - -0.3
850,277 - +0.5
850,277 - +0.4
850,277 - -1.7
850,300 - -3.4
850,300 - -2.4
850,316 - -2.9
850,362 + -1.8
850,401 + BBR_RS13720 0.12 -1.6
850,401 + BBR_RS13720 0.12 -0.2
850,401 + BBR_RS13720 0.12 -2.1
850,409 - BBR_RS13720 0.12 -2.6
850,409 - BBR_RS13720 0.12 -2.8
850,495 - BBR_RS13720 0.18 -1.5
850,540 + BBR_RS13720 0.21 -1.7
850,545 + BBR_RS13720 0.21 +0.1
850,553 - BBR_RS13720 0.21 +1.1
850,553 - BBR_RS13720 0.21 -2.2
850,602 + BBR_RS13720 0.24 -2.5
850,602 + BBR_RS13720 0.24 -1.8
850,604 - BBR_RS13720 0.24 -2.4
850,604 - BBR_RS13720 0.24 -1.8
850,681 + BBR_RS13720 0.29 -1.7
850,689 - BBR_RS13720 0.30 -4.1
850,689 - BBR_RS13720 0.30 -4.7
850,701 - BBR_RS13720 0.30 -2.5
850,701 - BBR_RS13720 0.30 -2.7
850,724 - BBR_RS13720 0.32 -2.0
850,806 + BBR_RS13720 0.37 -1.9
850,806 + BBR_RS13720 0.37 -1.5
850,851 + BBR_RS13720 0.40 -2.9
850,945 + BBR_RS13720 0.45 +2.8
851,839 + +0.3
851,844 - +2.6
851,847 - +0.6
851,855 - +1.1
851,866 - -2.5
851,874 - -0.8

Or see this region's nucleotide sequence