Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12135

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12130 and BBR_RS12135 are separated by 78 nucleotidesBBR_RS12135 and BBR_RS12140 are separated by 72 nucleotides BBR_RS12130: BBR_RS12130 - sulfite exporter TauE/SafE family protein, at 469,959 to 470,762 _RS12130 BBR_RS12135: BBR_RS12135 - anaerobic sulfatase maturase, at 470,841 to 472,133 _RS12135 BBR_RS12140: BBR_RS12140 - LacI family transcriptional regulator, at 472,206 to 473,267 _RS12140 Position (kb) 470 471 472 473Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 469.841 kb on - strandat 469.852 kb on + strandat 469.854 kb on + strandat 469.854 kb on + strandat 469.862 kb on - strandat 469.871 kb on + strandat 469.903 kb on - strandat 469.913 kb on + strandat 469.913 kb on + strandat 469.945 kb on + strandat 469.946 kb on - strandat 469.951 kb on - strandat 469.979 kb on + strandat 469.981 kb on + strandat 470.013 kb on + strandat 470.013 kb on + strandat 470.013 kb on + strandat 470.013 kb on + strandat 470.056 kb on - strand, within BBR_RS12130at 470.071 kb on + strand, within BBR_RS12130at 470.071 kb on + strand, within BBR_RS12130at 470.079 kb on - strand, within BBR_RS12130at 470.084 kb on - strand, within BBR_RS12130at 470.089 kb on - strand, within BBR_RS12130at 470.091 kb on + strand, within BBR_RS12130at 470.091 kb on - strand, within BBR_RS12130at 470.150 kb on - strand, within BBR_RS12130at 470.156 kb on + strand, within BBR_RS12130at 470.159 kb on - strand, within BBR_RS12130at 470.200 kb on + strand, within BBR_RS12130at 470.263 kb on + strand, within BBR_RS12130at 470.290 kb on - strand, within BBR_RS12130at 470.301 kb on - strand, within BBR_RS12130at 470.341 kb on + strand, within BBR_RS12130at 470.342 kb on - strand, within BBR_RS12130at 470.342 kb on - strand, within BBR_RS12130at 470.374 kb on + strand, within BBR_RS12130at 470.374 kb on + strand, within BBR_RS12130at 470.382 kb on - strand, within BBR_RS12130at 470.406 kb on + strand, within BBR_RS12130at 470.417 kb on + strand, within BBR_RS12130at 470.424 kb on - strand, within BBR_RS12130at 470.425 kb on - strand, within BBR_RS12130at 470.425 kb on - strand, within BBR_RS12130at 470.441 kb on + strand, within BBR_RS12130at 470.441 kb on + strand, within BBR_RS12130at 470.446 kb on + strand, within BBR_RS12130at 470.451 kb on + strand, within BBR_RS12130at 470.454 kb on - strand, within BBR_RS12130at 470.459 kb on - strand, within BBR_RS12130at 470.463 kb on - strand, within BBR_RS12130at 470.463 kb on - strand, within BBR_RS12130at 470.468 kb on - strand, within BBR_RS12130at 470.481 kb on + strand, within BBR_RS12130at 470.488 kb on - strand, within BBR_RS12130at 470.488 kb on - strand, within BBR_RS12130at 470.498 kb on + strand, within BBR_RS12130at 470.507 kb on - strand, within BBR_RS12130at 470.523 kb on - strand, within BBR_RS12130at 470.564 kb on - strand, within BBR_RS12130at 470.623 kb on - strand, within BBR_RS12130at 470.623 kb on - strand, within BBR_RS12130at 470.648 kb on + strand, within BBR_RS12130at 470.651 kb on - strand, within BBR_RS12130at 470.655 kb on - strand, within BBR_RS12130at 470.656 kb on + strand, within BBR_RS12130at 470.669 kb on - strand, within BBR_RS12130at 470.669 kb on - strand, within BBR_RS12130at 470.669 kb on - strand, within BBR_RS12130at 470.686 kb on - strandat 470.781 kb on + strandat 470.789 kb on - strandat 470.791 kb on - strandat 470.798 kb on + strandat 470.811 kb on - strandat 470.847 kb on - strandat 470.847 kb on - strandat 470.862 kb on + strandat 470.869 kb on - strandat 470.909 kb on + strandat 470.917 kb on - strandat 470.923 kb on + strandat 470.928 kb on + strandat 470.928 kb on + strandat 470.936 kb on - strandat 470.943 kb on - strandat 470.943 kb on - strandat 470.943 kb on - strandat 470.965 kb on - strandat 470.969 kb on + strandat 470.972 kb on - strand, within BBR_RS12135at 470.972 kb on - strand, within BBR_RS12135at 470.975 kb on + strand, within BBR_RS12135at 470.994 kb on - strand, within BBR_RS12135at 471.018 kb on - strand, within BBR_RS12135at 471.032 kb on + strand, within BBR_RS12135at 471.040 kb on - strand, within BBR_RS12135at 471.046 kb on + strand, within BBR_RS12135at 471.054 kb on - strand, within BBR_RS12135at 471.062 kb on + strand, within BBR_RS12135at 471.152 kb on - strand, within BBR_RS12135at 471.152 kb on - strand, within BBR_RS12135at 471.175 kb on - strand, within BBR_RS12135at 471.207 kb on + strand, within BBR_RS12135at 471.215 kb on - strand, within BBR_RS12135at 471.261 kb on + strand, within BBR_RS12135at 471.269 kb on - strand, within BBR_RS12135at 471.276 kb on + strand, within BBR_RS12135at 471.288 kb on - strand, within BBR_RS12135at 471.307 kb on + strand, within BBR_RS12135at 471.312 kb on + strand, within BBR_RS12135at 471.314 kb on - strand, within BBR_RS12135at 471.401 kb on + strand, within BBR_RS12135at 471.401 kb on + strand, within BBR_RS12135at 471.403 kb on - strand, within BBR_RS12135at 471.406 kb on + strand, within BBR_RS12135at 471.435 kb on + strand, within BBR_RS12135at 471.472 kb on + strand, within BBR_RS12135at 471.508 kb on + strand, within BBR_RS12135at 471.508 kb on + strand, within BBR_RS12135at 471.547 kb on - strand, within BBR_RS12135at 471.576 kb on + strand, within BBR_RS12135at 471.581 kb on + strand, within BBR_RS12135at 471.581 kb on + strand, within BBR_RS12135at 471.589 kb on - strand, within BBR_RS12135at 471.589 kb on - strand, within BBR_RS12135at 471.589 kb on - strand, within BBR_RS12135at 471.589 kb on - strand, within BBR_RS12135at 471.589 kb on - strand, within BBR_RS12135at 471.589 kb on - strand, within BBR_RS12135at 471.616 kb on + strand, within BBR_RS12135at 471.623 kb on + strand, within BBR_RS12135at 471.623 kb on + strand, within BBR_RS12135at 471.624 kb on - strand, within BBR_RS12135at 471.624 kb on - strand, within BBR_RS12135at 471.631 kb on - strand, within BBR_RS12135at 471.631 kb on - strand, within BBR_RS12135at 471.631 kb on - strand, within BBR_RS12135at 471.631 kb on - strand, within BBR_RS12135at 471.631 kb on - strand, within BBR_RS12135at 471.631 kb on - strand, within BBR_RS12135at 471.646 kb on - strand, within BBR_RS12135at 471.673 kb on + strand, within BBR_RS12135at 471.673 kb on + strand, within BBR_RS12135at 471.679 kb on - strand, within BBR_RS12135at 471.681 kb on - strand, within BBR_RS12135at 471.687 kb on + strand, within BBR_RS12135at 471.687 kb on + strand, within BBR_RS12135at 471.716 kb on + strand, within BBR_RS12135at 471.722 kb on - strand, within BBR_RS12135at 471.729 kb on - strand, within BBR_RS12135at 471.736 kb on - strand, within BBR_RS12135at 471.885 kb on - strand, within BBR_RS12135at 471.895 kb on - strand, within BBR_RS12135at 471.920 kb on + strand, within BBR_RS12135at 471.928 kb on + strand, within BBR_RS12135at 471.936 kb on - strand, within BBR_RS12135at 472.028 kb on - strandat 472.061 kb on + strandat 472.140 kb on - strandat 472.175 kb on - strandat 472.186 kb on - strandat 472.193 kb on + strandat 472.193 kb on + strandat 472.201 kb on - strandat 472.203 kb on + strandat 472.212 kb on - strandat 472.213 kb on - strandat 472.215 kb on + strandat 472.359 kb on + strand, within BBR_RS12140at 472.364 kb on + strand, within BBR_RS12140at 472.367 kb on - strand, within BBR_RS12140at 472.367 kb on - strand, within BBR_RS12140at 472.367 kb on - strand, within BBR_RS12140at 472.367 kb on - strand, within BBR_RS12140at 472.367 kb on - strand, within BBR_RS12140at 472.372 kb on - strand, within BBR_RS12140at 472.372 kb on - strand, within BBR_RS12140at 472.372 kb on - strand, within BBR_RS12140at 472.372 kb on - strand, within BBR_RS12140at 472.389 kb on - strand, within BBR_RS12140at 472.489 kb on - strand, within BBR_RS12140at 472.494 kb on - strand, within BBR_RS12140at 472.508 kb on - strand, within BBR_RS12140at 472.649 kb on - strand, within BBR_RS12140at 472.675 kb on - strand, within BBR_RS12140at 472.716 kb on - strand, within BBR_RS12140at 472.743 kb on - strand, within BBR_RS12140at 472.743 kb on - strand, within BBR_RS12140at 472.763 kb on - strand, within BBR_RS12140at 472.773 kb on - strand, within BBR_RS12140at 472.778 kb on - strand, within BBR_RS12140at 472.778 kb on - strand, within BBR_RS12140at 472.778 kb on - strand, within BBR_RS12140at 472.778 kb on - strand, within BBR_RS12140at 472.778 kb on - strand, within BBR_RS12140at 472.811 kb on - strand, within BBR_RS12140at 472.854 kb on - strand, within BBR_RS12140at 472.854 kb on - strand, within BBR_RS12140at 472.890 kb on - strand, within BBR_RS12140at 472.978 kb on - strand, within BBR_RS12140at 472.985 kb on - strand, within BBR_RS12140at 472.985 kb on - strand, within BBR_RS12140at 473.073 kb on - strand, within BBR_RS12140at 473.087 kb on - strand, within BBR_RS12140at 473.101 kb on - strand, within BBR_RS12140at 473.101 kb on - strand, within BBR_RS12140at 473.106 kb on - strand, within BBR_RS12140at 473.124 kb on - strand, within BBR_RS12140

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day3
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469,841 - -0.2
469,852 + +1.3
469,854 + +3.5
469,854 + +0.8
469,862 - -2.1
469,871 + +0.4
469,903 - -1.7
469,913 + -2.1
469,913 + +1.2
469,945 + -1.2
469,946 - -0.8
469,951 - +0.8
469,979 + +0.9
469,981 + -1.5
470,013 + -0.2
470,013 + -0.2
470,013 + -0.9
470,013 + -3.9
470,056 - BBR_RS12130 0.12 -3.0
470,071 + BBR_RS12130 0.14 +2.9
470,071 + BBR_RS12130 0.14 -0.0
470,079 - BBR_RS12130 0.15 -2.1
470,084 - BBR_RS12130 0.16 -2.1
470,089 - BBR_RS12130 0.16 +1.4
470,091 + BBR_RS12130 0.16 +1.6
470,091 - BBR_RS12130 0.16 -2.0
470,150 - BBR_RS12130 0.24 +2.5
470,156 + BBR_RS12130 0.25 +1.9
470,159 - BBR_RS12130 0.25 +0.9
470,200 + BBR_RS12130 0.30 +1.9
470,263 + BBR_RS12130 0.38 -2.7
470,290 - BBR_RS12130 0.41 +0.4
470,301 - BBR_RS12130 0.43 -1.0
470,341 + BBR_RS12130 0.48 -2.3
470,342 - BBR_RS12130 0.48 +2.4
470,342 - BBR_RS12130 0.48 -1.4
470,374 + BBR_RS12130 0.52 -0.9
470,374 + BBR_RS12130 0.52 -1.8
470,382 - BBR_RS12130 0.53 +0.5
470,406 + BBR_RS12130 0.56 -0.8
470,417 + BBR_RS12130 0.57 +1.5
470,424 - BBR_RS12130 0.58 -2.0
470,425 - BBR_RS12130 0.58 -2.2
470,425 - BBR_RS12130 0.58 +2.6
470,441 + BBR_RS12130 0.60 +1.2
470,441 + BBR_RS12130 0.60 -2.3
470,446 + BBR_RS12130 0.61 -0.1
470,451 + BBR_RS12130 0.61 -1.8
470,454 - BBR_RS12130 0.62 +0.4
470,459 - BBR_RS12130 0.62 -0.2
470,463 - BBR_RS12130 0.63 +2.7
470,463 - BBR_RS12130 0.63 +3.5
470,468 - BBR_RS12130 0.63 -0.0
470,481 + BBR_RS12130 0.65 +1.5
470,488 - BBR_RS12130 0.66 +2.2
470,488 - BBR_RS12130 0.66 -0.4
470,498 + BBR_RS12130 0.67 +2.4
470,507 - BBR_RS12130 0.68 -2.8
470,523 - BBR_RS12130 0.70 +0.7
470,564 - BBR_RS12130 0.75 -0.0
470,623 - BBR_RS12130 0.83 +3.4
470,623 - BBR_RS12130 0.83 +2.0
470,648 + BBR_RS12130 0.86 +1.4
470,651 - BBR_RS12130 0.86 -2.5
470,655 - BBR_RS12130 0.87 +1.6
470,656 + BBR_RS12130 0.87 +2.7
470,669 - BBR_RS12130 0.88 +1.2
470,669 - BBR_RS12130 0.88 +1.4
470,669 - BBR_RS12130 0.88 +1.4
470,686 - +0.8
470,781 + +1.3
470,789 - -0.0
470,791 - +1.8
470,798 + -2.2
470,811 - -2.5
470,847 - -1.8
470,847 - +3.0
470,862 + +2.6
470,869 - -2.4
470,909 + -1.8
470,917 - +3.3
470,923 + -3.2
470,928 + -2.1
470,928 + -2.6
470,936 - -0.1
470,943 - +2.6
470,943 - +3.3
470,943 - -2.1
470,965 - +0.5
470,969 + -2.0
470,972 - BBR_RS12135 0.10 -3.1
470,972 - BBR_RS12135 0.10 +1.1
470,975 + BBR_RS12135 0.10 -2.8
470,994 - BBR_RS12135 0.12 -0.5
471,018 - BBR_RS12135 0.14 +1.2
471,032 + BBR_RS12135 0.15 +2.3
471,040 - BBR_RS12135 0.15 +1.4
471,046 + BBR_RS12135 0.16 +2.9
471,054 - BBR_RS12135 0.16 -1.9
471,062 + BBR_RS12135 0.17 -1.5
471,152 - BBR_RS12135 0.24 +1.4
471,152 - BBR_RS12135 0.24 +0.5
471,175 - BBR_RS12135 0.26 -1.4
471,207 + BBR_RS12135 0.28 +1.0
471,215 - BBR_RS12135 0.29 +2.9
471,261 + BBR_RS12135 0.32 +1.1
471,269 - BBR_RS12135 0.33 -1.2
471,276 + BBR_RS12135 0.34 -1.6
471,288 - BBR_RS12135 0.35 -1.8
471,307 + BBR_RS12135 0.36 +1.4
471,312 + BBR_RS12135 0.36 +0.3
471,314 - BBR_RS12135 0.37 -1.9
471,401 + BBR_RS12135 0.43 -1.9
471,401 + BBR_RS12135 0.43 +1.9
471,403 - BBR_RS12135 0.43 +0.4
471,406 + BBR_RS12135 0.44 +1.7
471,435 + BBR_RS12135 0.46 +3.3
471,472 + BBR_RS12135 0.49 +1.0
471,508 + BBR_RS12135 0.52 +2.2
471,508 + BBR_RS12135 0.52 +1.1
471,547 - BBR_RS12135 0.55 +1.7
471,576 + BBR_RS12135 0.57 -1.9
471,581 + BBR_RS12135 0.57 -2.2
471,581 + BBR_RS12135 0.57 +1.0
471,589 - BBR_RS12135 0.58 +1.6
471,589 - BBR_RS12135 0.58 +1.8
471,589 - BBR_RS12135 0.58 +1.6
471,589 - BBR_RS12135 0.58 +0.5
471,589 - BBR_RS12135 0.58 +1.5
471,589 - BBR_RS12135 0.58 -0.6
471,616 + BBR_RS12135 0.60 -2.3
471,623 + BBR_RS12135 0.60 +1.2
471,623 + BBR_RS12135 0.60 -1.8
471,624 - BBR_RS12135 0.61 -1.9
471,624 - BBR_RS12135 0.61 -0.9
471,631 - BBR_RS12135 0.61 +1.4
471,631 - BBR_RS12135 0.61 -2.1
471,631 - BBR_RS12135 0.61 -1.7
471,631 - BBR_RS12135 0.61 +0.3
471,631 - BBR_RS12135 0.61 -2.8
471,631 - BBR_RS12135 0.61 +0.3
471,646 - BBR_RS12135 0.62 -2.4
471,673 + BBR_RS12135 0.64 +1.2
471,673 + BBR_RS12135 0.64 +2.5
471,679 - BBR_RS12135 0.65 +1.2
471,681 - BBR_RS12135 0.65 +1.1
471,687 + BBR_RS12135 0.65 -2.6
471,687 + BBR_RS12135 0.65 -2.6
471,716 + BBR_RS12135 0.68 +1.8
471,722 - BBR_RS12135 0.68 +2.1
471,729 - BBR_RS12135 0.69 -1.9
471,736 - BBR_RS12135 0.69 -1.7
471,885 - BBR_RS12135 0.81 +1.1
471,895 - BBR_RS12135 0.82 +1.6
471,920 + BBR_RS12135 0.83 +0.2
471,928 + BBR_RS12135 0.84 -2.0
471,936 - BBR_RS12135 0.85 -1.0
472,028 - +2.5
472,061 + -2.1
472,140 - +0.6
472,175 - +1.2
472,186 - +0.1
472,193 + +2.9
472,193 + -3.5
472,201 - +1.1
472,203 + +2.6
472,212 - -3.5
472,213 - +2.1
472,215 + -2.0
472,359 + BBR_RS12140 0.14 -2.7
472,364 + BBR_RS12140 0.15 -0.6
472,367 - BBR_RS12140 0.15 -2.7
472,367 - BBR_RS12140 0.15 -3.8
472,367 - BBR_RS12140 0.15 -1.3
472,367 - BBR_RS12140 0.15 -0.8
472,367 - BBR_RS12140 0.15 -2.0
472,372 - BBR_RS12140 0.16 -1.8
472,372 - BBR_RS12140 0.16 -0.6
472,372 - BBR_RS12140 0.16 -0.5
472,372 - BBR_RS12140 0.16 -1.5
472,389 - BBR_RS12140 0.17 +0.3
472,489 - BBR_RS12140 0.27 -0.7
472,494 - BBR_RS12140 0.27 +0.0
472,508 - BBR_RS12140 0.28 -0.4
472,649 - BBR_RS12140 0.42 +2.1
472,675 - BBR_RS12140 0.44 +1.1
472,716 - BBR_RS12140 0.48 +1.1
472,743 - BBR_RS12140 0.51 -0.2
472,743 - BBR_RS12140 0.51 +0.0
472,763 - BBR_RS12140 0.52 -0.9
472,773 - BBR_RS12140 0.53 -2.5
472,778 - BBR_RS12140 0.54 +1.3
472,778 - BBR_RS12140 0.54 -0.4
472,778 - BBR_RS12140 0.54 -2.9
472,778 - BBR_RS12140 0.54 +1.0
472,778 - BBR_RS12140 0.54 -1.2
472,811 - BBR_RS12140 0.57 -1.4
472,854 - BBR_RS12140 0.61 -2.7
472,854 - BBR_RS12140 0.61 -2.6
472,890 - BBR_RS12140 0.64 -2.4
472,978 - BBR_RS12140 0.73 +0.7
472,985 - BBR_RS12140 0.73 +1.9
472,985 - BBR_RS12140 0.73 -0.8
473,073 - BBR_RS12140 0.82 -1.1
473,087 - BBR_RS12140 0.83 +0.1
473,101 - BBR_RS12140 0.84 +1.5
473,101 - BBR_RS12140 0.84 -1.5
473,106 - BBR_RS12140 0.85 -1.0
473,124 - BBR_RS12140 0.86 -2.4

Or see this region's nucleotide sequence