Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0444 and Dshi_0445 are separated by 33 nucleotides Dshi_0445 and Dshi_0446 are separated by 130 nucleotides Dshi_0446 and Dshi_0447 are separated by 1 nucleotides Dshi_0447 and Dshi_0448 are separated by 316 nucleotides
Dshi_0444: Dshi_0444 - hypothetical protein (RefSeq), at 433,725 to 434,012
_0444
Dshi_0445: Dshi_0445 - hypothetical protein (RefSeq), at 434,046 to 434,438
_0445
Dshi_0446: Dshi_0446 - putative signal transduction protein with CBS domains (RefSeq), at 434,569 to 434,979
_0446
Dshi_0447: Dshi_0447 - transcriptional regulator, Crp/Fnr family (RefSeq), at 434,981 to 435,769
_0447
Dshi_0448: Dshi_0448 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 436,086 to 437,696
_0448
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.989 kb on + strand at 433.990 kb on + strand at 434.011 kb on + strand at 434.024 kb on - strand at 434.030 kb on - strand at 434.058 kb on + strand at 434.117 kb on - strand, within Dshi_0445 at 434.150 kb on + strand, within Dshi_0445 at 434.159 kb on + strand, within Dshi_0445 at 434.167 kb on - strand, within Dshi_0445 at 434.182 kb on + strand, within Dshi_0445 at 434.205 kb on + strand, within Dshi_0445 at 434.213 kb on - strand, within Dshi_0445 at 434.217 kb on + strand, within Dshi_0445 at 434.217 kb on + strand, within Dshi_0445 at 434.264 kb on + strand, within Dshi_0445 at 434.270 kb on - strand, within Dshi_0445 at 434.291 kb on - strand, within Dshi_0445 at 434.301 kb on + strand, within Dshi_0445 at 434.322 kb on - strand, within Dshi_0445 at 434.327 kb on + strand, within Dshi_0445 at 434.376 kb on - strand, within Dshi_0445 at 434.418 kb on + strand at 434.447 kb on + strand at 434.447 kb on + strand at 434.447 kb on + strand at 434.454 kb on - strand at 434.454 kb on - strand at 434.455 kb on - strand at 434.455 kb on - strand at 434.455 kb on - strand at 434.457 kb on + strand at 434.474 kb on + strand at 434.496 kb on + strand at 434.524 kb on + strand at 434.533 kb on - strand at 434.553 kb on + strand at 434.594 kb on + strand at 434.598 kb on + strand at 434.599 kb on + strand at 434.625 kb on + strand, within Dshi_0446 at 434.644 kb on - strand, within Dshi_0446 at 434.683 kb on + strand, within Dshi_0446 at 434.727 kb on + strand, within Dshi_0446 at 434.763 kb on + strand, within Dshi_0446 at 434.780 kb on - strand, within Dshi_0446 at 434.840 kb on - strand, within Dshi_0446 at 434.887 kb on + strand, within Dshi_0446 at 434.945 kb on + strand at 435.025 kb on + strand at 435.067 kb on + strand, within Dshi_0447 at 435.082 kb on + strand, within Dshi_0447 at 435.139 kb on - strand, within Dshi_0447 at 435.251 kb on + strand, within Dshi_0447 at 435.259 kb on - strand, within Dshi_0447 at 435.278 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.309 kb on - strand, within Dshi_0447 at 435.309 kb on - strand, within Dshi_0447 at 435.424 kb on + strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.470 kb on - strand, within Dshi_0447 at 435.549 kb on + strand, within Dshi_0447 at 435.587 kb on - strand, within Dshi_0447 at 435.600 kb on + strand, within Dshi_0447 at 435.601 kb on - strand, within Dshi_0447 at 435.653 kb on - strand, within Dshi_0447 at 435.653 kb on - strand, within Dshi_0447 at 435.718 kb on - strand at 435.758 kb on - strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.791 kb on + strand at 435.797 kb on - strand at 435.797 kb on - strand at 435.840 kb on + strand at 435.840 kb on + strand at 435.841 kb on + strand at 435.848 kb on - strand at 435.867 kb on - strand at 435.880 kb on + strand at 435.884 kb on - strand at 435.885 kb on + strand at 435.891 kb on + strand at 435.893 kb on - strand at 435.899 kb on - strand at 435.933 kb on + strand at 435.933 kb on + strand at 435.935 kb on + strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.943 kb on - strand at 435.948 kb on + strand at 435.956 kb on - strand at 435.956 kb on - strand at 435.956 kb on - strand at 435.985 kb on + strand at 436.019 kb on + strand at 436.025 kb on - strand at 436.027 kb on - strand at 436.073 kb on + strand at 436.076 kb on - strand at 436.076 kb on - strand at 436.078 kb on + strand at 436.106 kb on + strand at 436.109 kb on + strand at 436.141 kb on + strand at 436.151 kb on + strand at 436.167 kb on + strand at 436.212 kb on - strand at 436.220 kb on + strand at 436.228 kb on - strand at 436.243 kb on + strand at 436.251 kb on - strand, within Dshi_0448 at 436.258 kb on + strand, within Dshi_0448 at 436.301 kb on + strand, within Dshi_0448 at 436.311 kb on + strand, within Dshi_0448 at 436.311 kb on + strand, within Dshi_0448 at 436.320 kb on + strand, within Dshi_0448 at 436.320 kb on + strand, within Dshi_0448 at 436.391 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.498 kb on + strand, within Dshi_0448 at 436.543 kb on + strand, within Dshi_0448 at 436.550 kb on + strand, within Dshi_0448 at 436.563 kb on + strand, within Dshi_0448 at 436.582 kb on + strand, within Dshi_0448 at 436.615 kb on - strand, within Dshi_0448 at 436.620 kb on - strand, within Dshi_0448 at 436.620 kb on - strand, within Dshi_0448 at 436.622 kb on + strand, within Dshi_0448 at 436.632 kb on + strand, within Dshi_0448 at 436.649 kb on + strand, within Dshi_0448 at 436.676 kb on - strand, within Dshi_0448 at 436.678 kb on + strand at 436.688 kb on + strand, within Dshi_0448 at 436.690 kb on + strand, within Dshi_0448 at 436.690 kb on + strand, within Dshi_0448 at 436.697 kb on - strand, within Dshi_0448 at 436.700 kb on + strand, within Dshi_0448 at 436.707 kb on + strand, within Dshi_0448 at 436.707 kb on + strand, within Dshi_0448 at 436.708 kb on - strand, within Dshi_0448 at 436.708 kb on - strand, within Dshi_0448 at 436.715 kb on - strand, within Dshi_0448 at 436.749 kb on + strand, within Dshi_0448 at 436.751 kb on + strand, within Dshi_0448 at 436.751 kb on + strand, within Dshi_0448 at 436.767 kb on + strand, within Dshi_0448
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 433,989 + +0.4 433,990 + +1.2 434,011 + -1.1 434,024 - +0.3 434,030 - -0.3 434,058 + -0.1 434,117 - Dshi_0445 0.18 -0.7 434,150 + Dshi_0445 0.26 -0.5 434,159 + Dshi_0445 0.29 -0.4 434,167 - Dshi_0445 0.31 -0.6 434,182 + Dshi_0445 0.35 -0.0 434,205 + Dshi_0445 0.40 -0.3 434,213 - Dshi_0445 0.42 +0.3 434,217 + Dshi_0445 0.44 -1.4 434,217 + Dshi_0445 0.44 -1.1 434,264 + Dshi_0445 0.55 +0.0 434,270 - Dshi_0445 0.57 +0.0 434,291 - Dshi_0445 0.62 +0.4 434,301 + Dshi_0445 0.65 +0.2 434,322 - Dshi_0445 0.70 -0.4 434,327 + Dshi_0445 0.72 -0.8 434,376 - Dshi_0445 0.84 -0.3 434,418 + -0.2 434,447 + -1.8 434,447 + -0.9 434,447 + -2.5 434,454 - -1.4 434,454 - -0.1 434,455 - -1.1 434,455 - -0.2 434,455 - -2.0 434,457 + +0.3 434,474 + -1.1 434,496 + +0.1 434,524 + +0.3 434,533 - -0.9 434,553 + +0.4 434,594 + -0.4 434,598 + +0.3 434,599 + +1.6 434,625 + Dshi_0446 0.14 +0.6 434,644 - Dshi_0446 0.18 -1.3 434,683 + Dshi_0446 0.28 +1.5 434,727 + Dshi_0446 0.38 +1.6 434,763 + Dshi_0446 0.47 +0.3 434,780 - Dshi_0446 0.51 +0.6 434,840 - Dshi_0446 0.66 +1.6 434,887 + Dshi_0446 0.77 +0.2 434,945 + -0.3 435,025 + -0.6 435,067 + Dshi_0447 0.11 +0.3 435,082 + Dshi_0447 0.13 +0.2 435,139 - Dshi_0447 0.20 -0.2 435,251 + Dshi_0447 0.34 -1.0 435,259 - Dshi_0447 0.35 -1.6 435,278 + Dshi_0447 0.38 -1.7 435,301 + Dshi_0447 0.41 +0.8 435,301 + Dshi_0447 0.41 +0.3 435,301 + Dshi_0447 0.41 -0.1 435,309 - Dshi_0447 0.42 +0.4 435,309 - Dshi_0447 0.42 -1.9 435,424 + Dshi_0447 0.56 +0.2 435,427 - Dshi_0447 0.57 -0.9 435,427 - Dshi_0447 0.57 +0.7 435,427 - Dshi_0447 0.57 -0.4 435,462 + Dshi_0447 0.61 -0.2 435,462 + Dshi_0447 0.61 +1.6 435,462 + Dshi_0447 0.61 -1.1 435,470 - Dshi_0447 0.62 -0.2 435,549 + Dshi_0447 0.72 -0.6 435,587 - Dshi_0447 0.77 +0.4 435,600 + Dshi_0447 0.78 -1.0 435,601 - Dshi_0447 0.79 -2.6 435,653 - Dshi_0447 0.85 -0.5 435,653 - Dshi_0447 0.85 -0.2 435,718 - +0.3 435,758 - -0.2 435,789 + -1.0 435,789 + +2.1 435,789 + -0.1 435,789 + +0.5 435,791 + -3.0 435,797 - -0.3 435,797 - +0.2 435,840 + +0.4 435,840 + -0.3 435,841 + -1.2 435,848 - -1.2 435,867 - -1.0 435,880 + -0.4 435,884 - -2.2 435,885 + +0.0 435,891 + +0.2 435,893 - +0.0 435,899 - +0.8 435,933 + -0.9 435,933 + -0.1 435,935 + +0.9 435,941 - -0.0 435,941 - +0.9 435,941 - -0.9 435,941 - +0.2 435,943 - -0.0 435,948 + -0.3 435,956 - +0.6 435,956 - +0.4 435,956 - -0.4 435,985 + -0.6 436,019 + +0.2 436,025 - -1.1 436,027 - -1.4 436,073 + -0.3 436,076 - -1.2 436,076 - -0.5 436,078 + -0.0 436,106 + +0.5 436,109 + -0.5 436,141 + +0.0 436,151 + -0.4 436,167 + +0.0 436,212 - -2.0 436,220 + -0.8 436,228 - -1.7 436,243 + -0.3 436,251 - Dshi_0448 0.10 -0.5 436,258 + Dshi_0448 0.11 +0.4 436,301 + Dshi_0448 0.13 -1.0 436,311 + Dshi_0448 0.14 +0.8 436,311 + Dshi_0448 0.14 -0.1 436,320 + Dshi_0448 0.15 -1.0 436,320 + Dshi_0448 0.15 +0.4 436,391 + Dshi_0448 0.19 -0.6 436,401 + Dshi_0448 0.20 -1.4 436,401 + Dshi_0448 0.20 -0.9 436,401 + Dshi_0448 0.20 -0.3 436,401 + Dshi_0448 0.20 -0.1 436,498 + Dshi_0448 0.26 -0.7 436,543 + Dshi_0448 0.28 -0.8 436,550 + Dshi_0448 0.29 -0.3 436,563 + Dshi_0448 0.30 -2.6 436,582 + Dshi_0448 0.31 +0.2 436,615 - Dshi_0448 0.33 -0.6 436,620 - Dshi_0448 0.33 -0.1 436,620 - Dshi_0448 0.33 +0.2 436,622 + Dshi_0448 0.33 +1.1 436,632 + Dshi_0448 0.34 -0.1 436,649 + Dshi_0448 0.35 +0.3 436,676 - Dshi_0448 0.37 +1.2 436,678 + -1.7 436,688 + Dshi_0448 0.37 +0.6 436,690 + Dshi_0448 0.37 -1.3 436,690 + Dshi_0448 0.37 +0.2 436,697 - Dshi_0448 0.38 -0.8 436,700 + Dshi_0448 0.38 +1.1 436,707 + Dshi_0448 0.39 -1.3 436,707 + Dshi_0448 0.39 +0.2 436,708 - Dshi_0448 0.39 +0.9 436,708 - Dshi_0448 0.39 -0.0 436,715 - Dshi_0448 0.39 +1.0 436,749 + Dshi_0448 0.41 -0.2 436,751 + Dshi_0448 0.41 -0.3 436,751 + Dshi_0448 0.41 +0.2 436,767 + Dshi_0448 0.42 -0.2
Or see this region's nucleotide sequence