Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2176

Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
2,254,958	+	idiA	Synpcc7942_2175	0.19	+1.0
2,254,958	-	idiA	Synpcc7942_2175	0.19	+2.0
2,254,958	-	idiA	Synpcc7942_2175	0.19	-1.4
2,254,960	+	idiA	Synpcc7942_2175	0.19	-0.4
2,255,009	+	idiA	Synpcc7942_2175	0.24	-1.2
2,255,167	+	idiA	Synpcc7942_2175	0.38	-0.7
2,255,194	+	idiA	Synpcc7942_2175	0.41	-0.7
2,255,202	-	idiA	Synpcc7942_2175	0.41	+1.3
2,255,202	-	idiA	Synpcc7942_2175	0.41	-0.2
2,255,234	+	idiA	Synpcc7942_2175	0.44	+0.0
2,255,242	-	idiA	Synpcc7942_2175	0.45	+2.0
2,255,272	+				+1.0
2,255,279	-	idiA	Synpcc7942_2175	0.48	+0.0
2,255,283	+	idiA	Synpcc7942_2175	0.49	-1.2
2,255,283	+	idiA	Synpcc7942_2175	0.49	-0.9
2,255,324	-	idiA	Synpcc7942_2175	0.52	+0.2
2,255,334	-	idiA	Synpcc7942_2175	0.53	-0.3
2,255,339	+	idiA	Synpcc7942_2175	0.54	+0.0
2,255,341	+	idiA	Synpcc7942_2175	0.54	-0.6
2,255,360	-	idiA	Synpcc7942_2175	0.56	+0.0
2,255,380	-	idiA	Synpcc7942_2175	0.57	-0.4
2,255,396	+	idiA	Synpcc7942_2175	0.59	+0.0
2,255,396	+	idiA	Synpcc7942_2175	0.59	+2.0
2,255,404	-	idiA	Synpcc7942_2175	0.60	+0.0
2,255,406	+	idiA	Synpcc7942_2175	0.60	-0.3
2,255,406	+	idiA	Synpcc7942_2175	0.60	+0.4
2,255,427	-	idiA	Synpcc7942_2175	0.62	-1.0
2,255,458	-	idiA	Synpcc7942_2175	0.65	-0.2
2,255,460	+	idiA	Synpcc7942_2175	0.65	+1.0
2,255,499	-	idiA	Synpcc7942_2175	0.68	-1.0
2,255,500	+	idiA	Synpcc7942_2175	0.68	+1.0
2,255,500	+	idiA	Synpcc7942_2175	0.68	+0.6
2,255,500	+				+2.0
2,255,513	+				+1.0
2,255,535	-	idiA	Synpcc7942_2175	0.72	-0.8
2,255,573	+	idiA	Synpcc7942_2175	0.75	+1.0
2,255,573	+	idiA	Synpcc7942_2175	0.75	-2.4
2,255,573	+				-1.1
2,255,581	-				-1.0
2,255,584	+	idiA	Synpcc7942_2175	0.76	-0.2
2,255,592	-	idiA	Synpcc7942_2175	0.77	+1.0
2,255,744	-				-1.0
2,255,764	+				-1.4
2,255,824	+				-1.0
2,255,833	-				-0.6
2,255,853	-				+0.0
2,255,900	-				+0.0
2,255,918	+				+1.9
2,255,918	+				-1.7
2,255,918	+				-0.6
2,255,926	-				+1.0
2,255,926	-				-0.7
2,255,926	-				+0.4
2,255,936	-				+2.0
2,255,943	+				-2.3
2,255,957	-				-0.3
2,255,958	-				-1.5
2,255,962	-				+0.2
2,255,963	-				-0.7
2,255,974	-				+1.0
2,255,999	+				-0.6
2,255,999	+				+0.0
2,256,001	+				+1.0
2,256,001	+				-1.0
2,256,020	+				-1.0
2,256,021	+				+0.0
2,256,029	-				-0.8
2,256,051	-				+2.0
2,256,064	-				-0.7
2,256,100	+	dpsA	Synpcc7942_2176	0.13	-0.1
2,256,108	-	dpsA	Synpcc7942_2176	0.14	-1.3
2,256,108	-	dpsA	Synpcc7942_2176	0.14	-1.1
2,256,108	-	dpsA	Synpcc7942_2176	0.14	-0.3
2,256,110	+	dpsA	Synpcc7942_2176	0.14	-1.0
2,256,113	-	dpsA	Synpcc7942_2176	0.14	-1.9
2,256,128	+	dpsA	Synpcc7942_2176	0.15	-1.2
2,256,130	-	dpsA	Synpcc7942_2176	0.16	-0.5
2,256,135	+	dpsA	Synpcc7942_2176	0.16	-1.8
2,256,135	+	dpsA	Synpcc7942_2176	0.16	-0.8
2,256,143	-	dpsA	Synpcc7942_2176	0.17	-1.2
2,256,150	-	dpsA	Synpcc7942_2176	0.17	-0.1
2,256,172	+	dpsA	Synpcc7942_2176	0.19	+2.6
2,256,180	-	dpsA	Synpcc7942_2176	0.20	-0.5
2,256,195	+	dpsA	Synpcc7942_2176	0.21	+0.3
2,256,213	-	dpsA	Synpcc7942_2176	0.23	-0.6
2,256,218	-	dpsA	Synpcc7942_2176	0.23	-2.4
2,256,232	+	dpsA	Synpcc7942_2176	0.25	-0.9
2,256,240	-	dpsA	Synpcc7942_2176	0.25	-1.5
2,256,260	-	dpsA	Synpcc7942_2176	0.27	+1.4
2,256,357	+	dpsA	Synpcc7942_2176	0.35	-3.0
2,256,360	-	dpsA	Synpcc7942_2176	0.36	-1.1
2,256,362	+	dpsA	Synpcc7942_2176	0.36	-2.5
2,256,365	-	dpsA	Synpcc7942_2176	0.36	-1.3
2,256,365	-	dpsA	Synpcc7942_2176	0.36	-0.6
2,256,406	+	dpsA	Synpcc7942_2176	0.40	-1.2
2,256,406	+	dpsA	Synpcc7942_2176	0.40	-1.9
2,256,437	-	dpsA	Synpcc7942_2176	0.42	+0.0
2,256,444	-	dpsA	Synpcc7942_2176	0.43	+0.0
2,256,475	+	dpsA	Synpcc7942_2176	0.46	-0.6
2,256,483	-	dpsA	Synpcc7942_2176	0.46	-1.9
2,256,483	-	dpsA	Synpcc7942_2176	0.46	-0.9
2,256,485	-	dpsA	Synpcc7942_2176	0.47	-0.7
2,256,527	-	dpsA	Synpcc7942_2176	0.50	+1.0
2,256,576	-	dpsA	Synpcc7942_2176	0.55	-1.0
2,256,578	+				-0.4
2,256,578	+	dpsA	Synpcc7942_2176	0.55	+2.6
2,256,578	+				-1.2
2,256,586	+	dpsA	Synpcc7942_2176	0.55	-0.8
2,256,586	-	dpsA	Synpcc7942_2176	0.55	-0.0
2,256,586	-	dpsA	Synpcc7942_2176	0.55	-2.3
2,256,586	-	dpsA	Synpcc7942_2176	0.55	+0.4
2,256,600	+	dpsA	Synpcc7942_2176	0.57	+0.3
2,256,600	+	dpsA	Synpcc7942_2176	0.57	+0.4
2,256,600	+	dpsA	Synpcc7942_2176	0.57	-0.8
2,256,600	+	dpsA	Synpcc7942_2176	0.57	+1.0
2,256,600	+	dpsA	Synpcc7942_2176	0.57	-1.3
2,256,608	-	dpsA	Synpcc7942_2176	0.57	+0.6
2,256,608	-	dpsA	Synpcc7942_2176	0.57	-0.6
2,256,608	-	dpsA	Synpcc7942_2176	0.57	-2.4
2,256,608	-	dpsA	Synpcc7942_2176	0.57	-0.4
2,256,609	-	dpsA	Synpcc7942_2176	0.57	-0.1
2,256,615	+	dpsA	Synpcc7942_2176	0.58	-1.1
2,256,615	+	dpsA	Synpcc7942_2176	0.58	-0.3
2,256,628	-	dpsA	Synpcc7942_2176	0.59	-1.2
2,256,630	-	dpsA	Synpcc7942_2176	0.59	+0.0
2,256,646	+	dpsA	Synpcc7942_2176	0.61	-0.6
2,256,652	-	dpsA	Synpcc7942_2176	0.61	-0.5
2,256,653	-	dpsA	Synpcc7942_2176	0.61	-2.0
2,256,676	-	dpsA	Synpcc7942_2176	0.63	-0.9
2,256,728	-	dpsA	Synpcc7942_2176	0.68	-0.2
2,256,800	+	dpsA	Synpcc7942_2176	0.74	-1.3
2,256,818	+	dpsA	Synpcc7942_2176	0.76	-0.6
2,256,839	-	dpsA	Synpcc7942_2176	0.77	-1.8
2,256,874	-	dpsA	Synpcc7942_2176	0.81	+1.1
2,256,887	+	dpsA	Synpcc7942_2176	0.82	-1.3
2,256,890	-	dpsA	Synpcc7942_2176	0.82	+0.0
2,256,890	-	dpsA	Synpcc7942_2176	0.82	-0.5
2,256,915	+	dpsA	Synpcc7942_2176	0.84	-0.4
2,256,972	-	dpsA	Synpcc7942_2176	0.89	-1.7
2,256,974	-	dpsA	Synpcc7942_2176	0.89	-1.9
2,256,991	-				-0.8
2,256,991	-				-3.2
2,257,000	+				-1.0
2,257,008	-				+0.0
2,257,042	+				-0.2
2,257,050	-				+1.0
2,257,053	+				-0.1
2,257,064	+				+0.8
2,257,072	-				+1.0
2,257,131	+				+0.5
2,257,138	-				-2.2
2,257,167	+				-0.9
2,257,167	+				-0.5
2,257,168	+				+1.0
2,257,168	+				-0.6
2,257,176	-				+0.4
2,257,177	+				-0.6
2,257,185	-				+1.0
2,257,197	+				-0.3
2,257,207	-				+1.0
2,257,224	+				-1.3
2,257,232	-	natD	Synpcc7942_2177	0.10	-0.1
2,257,232	-	natD	Synpcc7942_2177	0.10	+0.0
2,257,232	-	natD	Synpcc7942_2177	0.10	+0.6
2,257,320	-	natD	Synpcc7942_2177	0.20	-0.9
2,257,339	+	natD	Synpcc7942_2177	0.22	+0.2
2,257,347	-	natD	Synpcc7942_2177	0.23	+0.0
2,257,351	+	natD	Synpcc7942_2177	0.23	-0.7
2,257,351	+	natD	Synpcc7942_2177	0.23	-1.4
2,257,359	-	natD	Synpcc7942_2177	0.24	+0.0
2,257,359	-	natD	Synpcc7942_2177	0.24	-0.4
2,257,359	-	natD	Synpcc7942_2177	0.24	-0.7
2,257,420	+				+0.6
2,257,424	-	natD	Synpcc7942_2177	0.32	-1.0
2,257,474	+	natD	Synpcc7942_2177	0.37	-1.7
2,257,474	+	natD	Synpcc7942_2177	0.37	-1.0
2,257,474	+	natD	Synpcc7942_2177	0.37	-0.6
2,257,482	-	natD	Synpcc7942_2177	0.38	-2.2
2,257,560	+	natD	Synpcc7942_2177	0.47	-1.3
2,257,560	+	natD	Synpcc7942_2177	0.47	+0.4
2,257,561	+	natD	Synpcc7942_2177	0.47	-0.8
2,257,610	+	natD	Synpcc7942_2177	0.52	-0.6
2,257,640	+	natD	Synpcc7942_2177	0.56	-0.2
2,257,663	-	natD	Synpcc7942_2177	0.58	+3.0
2,257,663	-	natD	Synpcc7942_2177	0.58	-1.2
2,257,667	+	natD	Synpcc7942_2177	0.59	-0.3
2,257,667	+	natD	Synpcc7942_2177	0.59	-0.4
2,257,702	+	natD	Synpcc7942_2177	0.63	-0.6
2,257,710	-	natD	Synpcc7942_2177	0.64	+0.1
2,257,712	+	natD	Synpcc7942_2177	0.64	-2.0
2,257,712	+	natD	Synpcc7942_2177	0.64	-0.1
2,257,712	+	natD	Synpcc7942_2177	0.64	-0.3
2,257,712	+	natD	Synpcc7942_2177	0.64	-2.2
2,257,712	+	natD	Synpcc7942_2177	0.64	-0.2
2,257,712	+	natD	Synpcc7942_2177	0.64	-1.3
2,257,712	+	natD	Synpcc7942_2177	0.64	-1.1
2,257,712	+	natD	Synpcc7942_2177	0.64	+1.0
2,257,712	+	natD	Synpcc7942_2177	0.64	-0.6
2,257,720	-	natD	Synpcc7942_2177	0.65	+0.3
2,257,720	-	natD	Synpcc7942_2177	0.65	-1.4
2,257,720	-	natD	Synpcc7942_2177	0.65	+2.5
2,257,720	-	natD	Synpcc7942_2177	0.65	-0.8
2,257,720	-	natD	Synpcc7942_2177	0.65	+0.7
2,257,735	+	natD	Synpcc7942_2177	0.66	+1.4
2,257,768	+	natD	Synpcc7942_2177	0.70	-0.7
2,257,768	+	natD	Synpcc7942_2177	0.70	-0.8
2,257,798	-	natD	Synpcc7942_2177	0.74	+1.0
2,257,873	+	natD	Synpcc7942_2177	0.82	-0.5
2,257,880	-	natD	Synpcc7942_2177	0.83	+1.0
2,257,883	+	natD	Synpcc7942_2177	0.83	+0.0
2,257,883	+	natD	Synpcc7942_2177	0.83	+1.0
2,257,891	-	natD	Synpcc7942_2177	0.84	-0.5
2,257,891	-	natD	Synpcc7942_2177	0.84	-0.7
2,257,895	+	natD	Synpcc7942_2177	0.84	-1.4
2,257,931	+	natD	Synpcc7942_2177	0.88	+0.6
2,258,016	+				-0.2
2,258,019	-				-0.8