Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1203

Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1202 and Synpcc7942_1203 are separated by 69 nucleotidesSynpcc7942_1203 and Synpcc7942_1204 overlap by 4 nucleotidesSynpcc7942_1204 and Synpcc7942_1205 are separated by 0 nucleotidesSynpcc7942_1205 and Synpcc7942_1206 overlap by 4 nucleotidesSynpcc7942_1206 and Synpcc7942_1207 are separated by 126 nucleotides Synpcc7942_1202: Synpcc7942_1202 - hypothetical protein, at 1,230,512 to 1,232,980 _1202 Synpcc7942_1203: Synpcc7942_1203 - hypothetical protein, at 1,233,050 to 1,233,463 _1203 Synpcc7942_1204: Synpcc7942_1204 - Prevent-host-death protein, at 1,233,460 to 1,233,774 _1204 Synpcc7942_1205: Synpcc7942_1205 - phage_integrase-like, at 1,233,775 to 1,233,939 _1205 Synpcc7942_1206: Synpcc7942_1206 - hypothetical protein, at 1,233,936 to 1,234,211 _1206 Synpcc7942_1207: Synpcc7942_1207 - Addiction module toxin, Txe/YoeB, at 1,234,338 to 1,234,601 _1207 Position (kb) 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1232.071 kb on + strand, within Synpcc7942_1202at 1232.107 kb on + strand, within Synpcc7942_1202at 1232.145 kb on + strand, within Synpcc7942_1202at 1232.179 kb on - strand, within Synpcc7942_1202at 1232.208 kb on + strand, within Synpcc7942_1202at 1232.216 kb on - strand, within Synpcc7942_1202at 1232.220 kb on + strand, within Synpcc7942_1202at 1232.228 kb on + strand, within Synpcc7942_1202at 1232.233 kb on - strand, within Synpcc7942_1202at 1232.277 kb on - strand, within Synpcc7942_1202at 1232.297 kb on + strand, within Synpcc7942_1202at 1232.305 kb on - strand, within Synpcc7942_1202at 1232.339 kb on - strand, within Synpcc7942_1202at 1232.361 kb on - strand, within Synpcc7942_1202at 1232.372 kb on - strand, within Synpcc7942_1202at 1232.421 kb on - strand, within Synpcc7942_1202at 1232.446 kb on + strand, within Synpcc7942_1202at 1232.452 kb on + strand, within Synpcc7942_1202at 1232.454 kb on - strand, within Synpcc7942_1202at 1232.454 kb on - strand, within Synpcc7942_1202at 1232.479 kb on + strand, within Synpcc7942_1202at 1232.479 kb on + strand, within Synpcc7942_1202at 1232.485 kb on + strand, within Synpcc7942_1202at 1232.489 kb on - strand, within Synpcc7942_1202at 1232.493 kb on - strand, within Synpcc7942_1202at 1232.500 kb on + strand, within Synpcc7942_1202at 1232.540 kb on + strand, within Synpcc7942_1202at 1232.540 kb on + strand, within Synpcc7942_1202at 1232.548 kb on - strand, within Synpcc7942_1202at 1232.548 kb on - strand, within Synpcc7942_1202at 1232.562 kb on + strand, within Synpcc7942_1202at 1232.585 kb on - strand, within Synpcc7942_1202at 1232.593 kb on + strand, within Synpcc7942_1202at 1232.593 kb on + strand, within Synpcc7942_1202at 1232.601 kb on - strand, within Synpcc7942_1202at 1232.609 kb on - strand, within Synpcc7942_1202at 1232.619 kb on + strand, within Synpcc7942_1202at 1232.627 kb on - strand, within Synpcc7942_1202at 1232.627 kb on - strand, within Synpcc7942_1202at 1232.651 kb on + strand, within Synpcc7942_1202at 1232.651 kb on + strand, within Synpcc7942_1202at 1232.659 kb on - strand, within Synpcc7942_1202at 1232.659 kb on - strand, within Synpcc7942_1202at 1232.659 kb on - strand, within Synpcc7942_1202at 1232.688 kb on + strand, within Synpcc7942_1202at 1232.699 kb on + strand, within Synpcc7942_1202at 1232.726 kb on - strand, within Synpcc7942_1202at 1232.802 kb on + strandat 1232.804 kb on + strandat 1232.850 kb on - strandat 1232.883 kb on + strandat 1232.884 kb on - strandat 1232.899 kb on + strandat 1232.899 kb on + strandat 1232.899 kb on + strandat 1232.900 kb on + strandat 1232.900 kb on + strandat 1232.907 kb on - strandat 1232.907 kb on - strandat 1232.907 kb on - strandat 1232.924 kb on + strandat 1232.924 kb on + strandat 1232.924 kb on + strandat 1232.980 kb on + strandat 1233.035 kb on - strandat 1233.041 kb on - strandat 1233.041 kb on - strandat 1233.058 kb on + strandat 1233.064 kb on + strandat 1233.087 kb on + strandat 1233.158 kb on + strandat 1233.158 kb on + strand, within Synpcc7942_1203at 1233.158 kb on + strand, within Synpcc7942_1203at 1233.166 kb on - strand, within Synpcc7942_1203at 1233.166 kb on - strand, within Synpcc7942_1203at 1233.172 kb on + strand, within Synpcc7942_1203at 1233.172 kb on + strand, within Synpcc7942_1203at 1233.180 kb on - strand, within Synpcc7942_1203at 1233.198 kb on - strand, within Synpcc7942_1203at 1233.223 kb on - strand, within Synpcc7942_1203at 1233.242 kb on - strand, within Synpcc7942_1203at 1233.248 kb on + strand, within Synpcc7942_1203at 1233.283 kb on - strand, within Synpcc7942_1203at 1233.285 kb on + strand, within Synpcc7942_1203at 1233.304 kb on + strand, within Synpcc7942_1203at 1233.314 kb on + strand, within Synpcc7942_1203at 1233.317 kb on - strand, within Synpcc7942_1203at 1233.320 kb on + strand, within Synpcc7942_1203at 1233.343 kb on + strand, within Synpcc7942_1203at 1233.346 kb on + strand, within Synpcc7942_1203at 1233.354 kb on - strand, within Synpcc7942_1203at 1233.360 kb on + strand, within Synpcc7942_1203at 1233.366 kb on - strand, within Synpcc7942_1203at 1233.390 kb on + strand, within Synpcc7942_1203at 1233.398 kb on - strand, within Synpcc7942_1203at 1233.398 kb on - strand, within Synpcc7942_1203at 1233.407 kb on + strand, within Synpcc7942_1203at 1233.429 kb on + strandat 1233.429 kb on + strandat 1233.437 kb on - strandat 1233.437 kb on - strandat 1233.437 kb on - strandat 1233.443 kb on + strandat 1233.452 kb on + strandat 1233.452 kb on + strandat 1233.458 kb on + strandat 1233.476 kb on + strandat 1233.476 kb on + strandat 1233.495 kb on + strand, within Synpcc7942_1204at 1233.503 kb on - strand, within Synpcc7942_1204at 1233.503 kb on - strand, within Synpcc7942_1204at 1233.531 kb on + strand, within Synpcc7942_1204at 1233.539 kb on - strand, within Synpcc7942_1204at 1233.539 kb on - strand, within Synpcc7942_1204at 1233.567 kb on + strand, within Synpcc7942_1204at 1233.575 kb on - strand, within Synpcc7942_1204at 1233.575 kb on - strand, within Synpcc7942_1204at 1233.575 kb on - strand, within Synpcc7942_1204at 1233.575 kb on - strand, within Synpcc7942_1204at 1233.576 kb on + strand, within Synpcc7942_1204at 1233.655 kb on - strand, within Synpcc7942_1204at 1233.657 kb on + strand, within Synpcc7942_1204at 1233.667 kb on - strand, within Synpcc7942_1204at 1233.687 kb on + strandat 1233.695 kb on - strand, within Synpcc7942_1204at 1233.701 kb on - strand, within Synpcc7942_1204at 1233.730 kb on + strand, within Synpcc7942_1204at 1233.730 kb on + strand, within Synpcc7942_1204at 1233.738 kb on - strand, within Synpcc7942_1204at 1233.738 kb on - strand, within Synpcc7942_1204at 1233.738 kb on - strand, within Synpcc7942_1204at 1233.749 kb on - strandat 1233.765 kb on - strandat 1233.808 kb on + strand, within Synpcc7942_1205at 1233.813 kb on + strand, within Synpcc7942_1205at 1233.816 kb on - strand, within Synpcc7942_1205at 1233.816 kb on - strand, within Synpcc7942_1205at 1233.822 kb on - strand, within Synpcc7942_1205at 1233.832 kb on + strand, within Synpcc7942_1205at 1233.832 kb on + strand, within Synpcc7942_1205at 1233.832 kb on + strand, within Synpcc7942_1205at 1233.832 kb on + strand, within Synpcc7942_1205at 1233.840 kb on - strand, within Synpcc7942_1205at 1233.842 kb on + strandat 1233.842 kb on + strand, within Synpcc7942_1205at 1233.842 kb on + strand, within Synpcc7942_1205at 1233.842 kb on + strand, within Synpcc7942_1205at 1233.842 kb on + strand, within Synpcc7942_1205at 1233.850 kb on - strand, within Synpcc7942_1205at 1233.850 kb on - strand, within Synpcc7942_1205at 1233.850 kb on - strand, within Synpcc7942_1205at 1233.850 kb on - strand, within Synpcc7942_1205at 1233.850 kb on - strand, within Synpcc7942_1205at 1233.860 kb on - strand, within Synpcc7942_1205at 1233.871 kb on + strand, within Synpcc7942_1205at 1233.873 kb on + strand, within Synpcc7942_1205at 1233.873 kb on + strand, within Synpcc7942_1205at 1233.873 kb on + strand, within Synpcc7942_1205at 1233.876 kb on + strand, within Synpcc7942_1205at 1233.879 kb on - strand, within Synpcc7942_1205at 1233.881 kb on - strand, within Synpcc7942_1205at 1233.881 kb on - strand, within Synpcc7942_1205at 1233.881 kb on - strand, within Synpcc7942_1205at 1233.881 kb on - strand, within Synpcc7942_1205at 1233.885 kb on + strand, within Synpcc7942_1205at 1233.898 kb on - strand, within Synpcc7942_1205at 1233.922 kb on + strand, within Synpcc7942_1205at 1233.922 kb on + strand, within Synpcc7942_1205at 1233.930 kb on - strandat 1233.968 kb on - strand, within Synpcc7942_1206at 1233.974 kb on + strand, within Synpcc7942_1206at 1233.983 kb on - strand, within Synpcc7942_1206at 1233.983 kb on - strand, within Synpcc7942_1206at 1234.137 kb on + strand, within Synpcc7942_1206at 1234.139 kb on + strand, within Synpcc7942_1206at 1234.278 kb on + strandat 1234.286 kb on - strandat 1234.335 kb on + strandat 1234.343 kb on - strandat 1234.343 kb on - strandat 1234.347 kb on + strandat 1234.349 kb on + strandat 1234.400 kb on - strand, within Synpcc7942_1207at 1234.451 kb on + strand, within Synpcc7942_1207at 1234.453 kb on - strand, within Synpcc7942_1207

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
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1,232,071 + Synpcc7942_1202 0.63 -0.3
1,232,107 + Synpcc7942_1202 0.65 -1.6
1,232,145 + Synpcc7942_1202 0.66 -1.8
1,232,179 - Synpcc7942_1202 0.68 +0.1
1,232,208 + Synpcc7942_1202 0.69 +0.6
1,232,216 - Synpcc7942_1202 0.69 -0.9
1,232,220 + Synpcc7942_1202 0.69 -2.3
1,232,228 + Synpcc7942_1202 0.70 +1.0
1,232,233 - Synpcc7942_1202 0.70 -1.1
1,232,277 - Synpcc7942_1202 0.71 +1.0
1,232,297 + Synpcc7942_1202 0.72 +1.0
1,232,305 - Synpcc7942_1202 0.73 +1.0
1,232,339 - Synpcc7942_1202 0.74 -2.3
1,232,361 - Synpcc7942_1202 0.75 -1.4
1,232,372 - Synpcc7942_1202 0.75 +1.0
1,232,421 - Synpcc7942_1202 0.77 -1.1
1,232,446 + Synpcc7942_1202 0.78 +0.0
1,232,452 + Synpcc7942_1202 0.79 +1.0
1,232,454 - Synpcc7942_1202 0.79 -0.5
1,232,454 - Synpcc7942_1202 0.79 +1.0
1,232,479 + Synpcc7942_1202 0.80 -3.4
1,232,479 + Synpcc7942_1202 0.80 -1.8
1,232,485 + Synpcc7942_1202 0.80 +1.0
1,232,489 - Synpcc7942_1202 0.80 -1.3
1,232,493 - Synpcc7942_1202 0.80 -1.3
1,232,500 + Synpcc7942_1202 0.81 +2.6
1,232,540 + Synpcc7942_1202 0.82 -1.8
1,232,540 + Synpcc7942_1202 0.82 +0.0
1,232,548 - Synpcc7942_1202 0.82 -2.0
1,232,548 - Synpcc7942_1202 0.82 -0.9
1,232,562 + Synpcc7942_1202 0.83 +1.0
1,232,585 - Synpcc7942_1202 0.84 +1.0
1,232,593 + Synpcc7942_1202 0.84 +1.0
1,232,593 + Synpcc7942_1202 0.84 +1.0
1,232,601 - Synpcc7942_1202 0.85 -0.6
1,232,609 - Synpcc7942_1202 0.85 -0.6
1,232,619 + Synpcc7942_1202 0.85 -1.2
1,232,627 - Synpcc7942_1202 0.86 -2.7
1,232,627 - Synpcc7942_1202 0.86 -1.1
1,232,651 + Synpcc7942_1202 0.87 +1.0
1,232,651 + Synpcc7942_1202 0.87 +1.0
1,232,659 - Synpcc7942_1202 0.87 -1.6
1,232,659 - Synpcc7942_1202 0.87 -1.4
1,232,659 - Synpcc7942_1202 0.87 -1.9
1,232,688 + Synpcc7942_1202 0.88 +1.6
1,232,699 + Synpcc7942_1202 0.89 -0.6
1,232,726 - Synpcc7942_1202 0.90 -0.6
1,232,802 + +0.1
1,232,804 + -1.6
1,232,850 - +2.6
1,232,883 + +0.3
1,232,884 - +0.2
1,232,899 + -1.3
1,232,899 + -0.6
1,232,899 + -0.9
1,232,900 + -2.4
1,232,900 + -1.2
1,232,907 - -1.3
1,232,907 - +1.0
1,232,907 - -1.2
1,232,924 + -0.8
1,232,924 + -0.7
1,232,924 + -2.3
1,232,980 + -0.8
1,233,035 - +0.4
1,233,041 - +1.8
1,233,041 - -0.1
1,233,058 + -0.6
1,233,064 + +0.0
1,233,087 + +0.0
1,233,158 + -1.3
1,233,158 + Synpcc7942_1203 0.26 -0.5
1,233,158 + Synpcc7942_1203 0.26 -0.3
1,233,166 - Synpcc7942_1203 0.28 -0.9
1,233,166 - Synpcc7942_1203 0.28 +3.0
1,233,172 + Synpcc7942_1203 0.29 -0.6
1,233,172 + Synpcc7942_1203 0.29 +1.0
1,233,180 - Synpcc7942_1203 0.31 -0.2
1,233,198 - Synpcc7942_1203 0.36 -1.5
1,233,223 - Synpcc7942_1203 0.42 -1.6
1,233,242 - Synpcc7942_1203 0.46 -1.5
1,233,248 + Synpcc7942_1203 0.48 -1.4
1,233,283 - Synpcc7942_1203 0.56 -0.7
1,233,285 + Synpcc7942_1203 0.57 -0.9
1,233,304 + Synpcc7942_1203 0.61 -1.0
1,233,314 + Synpcc7942_1203 0.64 -0.9
1,233,317 - Synpcc7942_1203 0.64 +0.3
1,233,320 + Synpcc7942_1203 0.65 -0.7
1,233,343 + Synpcc7942_1203 0.71 -2.1
1,233,346 + Synpcc7942_1203 0.71 -1.2
1,233,354 - Synpcc7942_1203 0.73 -2.8
1,233,360 + Synpcc7942_1203 0.75 +0.6
1,233,366 - Synpcc7942_1203 0.76 +1.6
1,233,390 + Synpcc7942_1203 0.82 -0.4
1,233,398 - Synpcc7942_1203 0.84 -0.2
1,233,398 - Synpcc7942_1203 0.84 -1.0
1,233,407 + Synpcc7942_1203 0.86 -1.3
1,233,429 + -1.3
1,233,429 + -1.7
1,233,437 - +0.2
1,233,437 - +0.7
1,233,437 - +0.6
1,233,443 + +0.6
1,233,452 + -1.0
1,233,452 + -1.1
1,233,458 + -0.7
1,233,476 + +1.0
1,233,476 + -0.2
1,233,495 + Synpcc7942_1204 0.11 -0.1
1,233,503 - Synpcc7942_1204 0.14 -0.1
1,233,503 - Synpcc7942_1204 0.14 -0.2
1,233,531 + Synpcc7942_1204 0.23 -0.7
1,233,539 - Synpcc7942_1204 0.25 -1.7
1,233,539 - Synpcc7942_1204 0.25 +1.4
1,233,567 + Synpcc7942_1204 0.34 -0.3
1,233,575 - Synpcc7942_1204 0.37 -0.8
1,233,575 - Synpcc7942_1204 0.37 -0.2
1,233,575 - Synpcc7942_1204 0.37 -0.4
1,233,575 - Synpcc7942_1204 0.37 -0.6
1,233,576 + Synpcc7942_1204 0.37 -0.4
1,233,655 - Synpcc7942_1204 0.62 +2.4
1,233,657 + Synpcc7942_1204 0.63 +0.3
1,233,667 - Synpcc7942_1204 0.66 -1.5
1,233,687 + +0.3
1,233,695 - Synpcc7942_1204 0.75 -1.2
1,233,701 - Synpcc7942_1204 0.77 -0.6
1,233,730 + Synpcc7942_1204 0.86 -1.5
1,233,730 + Synpcc7942_1204 0.86 +1.0
1,233,738 - Synpcc7942_1204 0.88 +0.5
1,233,738 - Synpcc7942_1204 0.88 -0.5
1,233,738 - Synpcc7942_1204 0.88 -1.0
1,233,749 - -0.8
1,233,765 - +0.0
1,233,808 + Synpcc7942_1205 0.20 -0.2
1,233,813 + Synpcc7942_1205 0.23 -1.0
1,233,816 - Synpcc7942_1205 0.25 +1.4
1,233,816 - Synpcc7942_1205 0.25 -2.3
1,233,822 - Synpcc7942_1205 0.28 +1.0
1,233,832 + Synpcc7942_1205 0.35 +1.0
1,233,832 + Synpcc7942_1205 0.35 +1.0
1,233,832 + Synpcc7942_1205 0.35 +1.0
1,233,832 + Synpcc7942_1205 0.35 +0.3
1,233,840 - Synpcc7942_1205 0.39 +2.0
1,233,842 + -1.8
1,233,842 + Synpcc7942_1205 0.41 -0.8
1,233,842 + Synpcc7942_1205 0.41 -1.6
1,233,842 + Synpcc7942_1205 0.41 +0.4
1,233,842 + Synpcc7942_1205 0.41 -1.0
1,233,850 - Synpcc7942_1205 0.45 -0.6
1,233,850 - Synpcc7942_1205 0.45 -1.1
1,233,850 - Synpcc7942_1205 0.45 -1.7
1,233,850 - Synpcc7942_1205 0.45 +1.0
1,233,850 - Synpcc7942_1205 0.45 -1.5
1,233,860 - Synpcc7942_1205 0.52 -0.6
1,233,871 + Synpcc7942_1205 0.58 -0.4
1,233,873 + Synpcc7942_1205 0.59 +1.4
1,233,873 + Synpcc7942_1205 0.59 +0.4
1,233,873 + Synpcc7942_1205 0.59 +2.0
1,233,876 + Synpcc7942_1205 0.61 -1.8
1,233,879 - Synpcc7942_1205 0.63 -1.2
1,233,881 - Synpcc7942_1205 0.64 -1.3
1,233,881 - Synpcc7942_1205 0.64 +0.3
1,233,881 - Synpcc7942_1205 0.64 +0.7
1,233,881 - Synpcc7942_1205 0.64 -0.0
1,233,885 + Synpcc7942_1205 0.67 -0.5
1,233,898 - Synpcc7942_1205 0.75 -1.2
1,233,922 + Synpcc7942_1205 0.89 -1.3
1,233,922 + Synpcc7942_1205 0.89 -0.6
1,233,930 - -1.0
1,233,968 - Synpcc7942_1206 0.12 +1.0
1,233,974 + Synpcc7942_1206 0.14 -0.7
1,233,983 - Synpcc7942_1206 0.17 +2.4
1,233,983 - Synpcc7942_1206 0.17 +1.0
1,234,137 + Synpcc7942_1206 0.73 +0.7
1,234,139 + Synpcc7942_1206 0.74 +0.3
1,234,278 + -1.4
1,234,286 - +0.3
1,234,335 + +0.0
1,234,343 - +1.0
1,234,343 - +1.0
1,234,347 + -1.8
1,234,349 + -0.9
1,234,400 - Synpcc7942_1207 0.23 -1.0
1,234,451 + Synpcc7942_1207 0.43 -0.4
1,234,453 - Synpcc7942_1207 0.44 -0.8

Or see this region's nucleotide sequence