Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acnB and Synpcc7942_0904 are separated by 271 nucleotides Synpcc7942_0904 and Synpcc7942_0905 are separated by 429 nucleotides
Synpcc7942_0903: acnB - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 911,756 to 914,341
acnB
Synpcc7942_0904: Synpcc7942_0904 - hypothetical protein, at 914,613 to 915,158
_0904
Synpcc7942_0905: Synpcc7942_0905 - hypothetical protein, at 915,588 to 916,130
_0905
Position (kb) 914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2 at 914.475 kb on - strand at 914.494 kb on + strand at 914.507 kb on + strand at 914.518 kb on + strand at 914.526 kb on + strand at 914.564 kb on + strand at 914.578 kb on + strand at 914.625 kb on + strand at 914.628 kb on - strand at 914.646 kb on - strand at 914.668 kb on + strand, within Synpcc7942_0904 at 914.668 kb on + strand, within Synpcc7942_0904 at 914.684 kb on + strand, within Synpcc7942_0904 at 914.686 kb on - strand, within Synpcc7942_0904 at 914.692 kb on + strand, within Synpcc7942_0904 at 914.692 kb on - strand, within Synpcc7942_0904 at 914.714 kb on + strand, within Synpcc7942_0904 at 914.719 kb on + strand, within Synpcc7942_0904 at 914.727 kb on - strand, within Synpcc7942_0904 at 914.737 kb on + strand, within Synpcc7942_0904 at 914.745 kb on - strand, within Synpcc7942_0904 at 914.745 kb on - strand, within Synpcc7942_0904 at 914.747 kb on - strand, within Synpcc7942_0904 at 914.785 kb on - strand, within Synpcc7942_0904 at 914.834 kb on + strand, within Synpcc7942_0904 at 914.862 kb on - strand, within Synpcc7942_0904 at 914.938 kb on + strand, within Synpcc7942_0904 at 914.941 kb on - strand, within Synpcc7942_0904 at 915.023 kb on - strand, within Synpcc7942_0904 at 915.137 kb on - strand at 915.141 kb on - strand at 915.153 kb on + strand at 915.153 kb on + strand at 915.161 kb on - strand at 915.162 kb on + strand at 915.162 kb on + strand at 915.170 kb on - strand at 915.170 kb on - strand at 915.183 kb on - strand at 915.185 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.201 kb on + strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.209 kb on - strand at 915.302 kb on - strand at 915.302 kb on - strand at 915.597 kb on - strand at 915.639 kb on + strand at 915.681 kb on + strand, within Synpcc7942_0905 at 915.748 kb on + strand, within Synpcc7942_0905 at 915.855 kb on + strand, within Synpcc7942_0905 at 915.891 kb on + strand, within Synpcc7942_0905 at 915.893 kb on + strand, within Synpcc7942_0905 at 915.900 kb on - strand, within Synpcc7942_0905 at 915.932 kb on + strand, within Synpcc7942_0905 at 915.934 kb on - strand, within Synpcc7942_0905 at 915.992 kb on + strand, within Synpcc7942_0905 at 916.061 kb on + strand, within Synpcc7942_0905 at 916.125 kb on + strand at 916.125 kb on + strand at 916.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 914,475 - -0.2 914,494 + -0.7 914,507 + +0.5 914,518 + -1.1 914,526 + -1.5 914,564 + +2.0 914,578 + -0.6 914,625 + -0.8 914,628 - +1.0 914,646 - -0.5 914,668 + Synpcc7942_0904 0.10 +1.0 914,668 + Synpcc7942_0904 0.10 -1.0 914,684 + Synpcc7942_0904 0.13 +1.0 914,686 - Synpcc7942_0904 0.13 -1.7 914,692 + Synpcc7942_0904 0.14 -1.7 914,692 - Synpcc7942_0904 0.14 -0.6 914,714 + Synpcc7942_0904 0.18 -1.0 914,719 + Synpcc7942_0904 0.19 -0.6 914,727 - Synpcc7942_0904 0.21 -2.3 914,737 + Synpcc7942_0904 0.23 +1.0 914,745 - Synpcc7942_0904 0.24 -0.7 914,745 - Synpcc7942_0904 0.24 +0.0 914,747 - Synpcc7942_0904 0.25 +1.0 914,785 - Synpcc7942_0904 0.32 +0.0 914,834 + Synpcc7942_0904 0.40 -0.8 914,862 - Synpcc7942_0904 0.46 +2.6 914,938 + Synpcc7942_0904 0.60 -1.0 914,941 - Synpcc7942_0904 0.60 -0.9 915,023 - Synpcc7942_0904 0.75 -0.6 915,137 - +1.0 915,141 - -1.3 915,153 + -0.7 915,153 + -1.0 915,161 - -0.6 915,162 + -0.3 915,162 + +0.3 915,170 - +1.0 915,170 - -1.0 915,183 - -0.9 915,185 + +1.0 915,201 + -1.8 915,201 + -0.2 915,201 + +0.2 915,201 + -0.8 915,201 + -0.1 915,201 + +0.8 915,201 + -1.9 915,201 + +0.2 915,201 + +0.6 915,201 + -0.6 915,209 - -0.4 915,209 - +0.0 915,209 - +0.7 915,209 - -0.4 915,209 - -2.4 915,209 - -1.9 915,209 - +1.4 915,209 - -0.3 915,209 - -0.8 915,209 - -2.1 915,209 - +0.3 915,209 - -1.4 915,209 - +0.4 915,209 - -0.2 915,209 - -0.7 915,209 - +1.0 915,209 - +0.0 915,209 - -0.7 915,209 - +0.2 915,302 - -0.2 915,302 - -0.3 915,597 - -0.2 915,639 + -2.0 915,681 + Synpcc7942_0905 0.17 +0.4 915,748 + Synpcc7942_0905 0.29 +0.0 915,855 + Synpcc7942_0905 0.49 +2.2 915,891 + Synpcc7942_0905 0.56 -0.5 915,893 + Synpcc7942_0905 0.56 +0.2 915,900 - Synpcc7942_0905 0.57 -1.5 915,932 + Synpcc7942_0905 0.63 +0.3 915,934 - Synpcc7942_0905 0.64 +1.7 915,992 + Synpcc7942_0905 0.74 -1.0 916,061 + Synpcc7942_0905 0.87 -0.7 916,125 + -0.3 916,125 + -0.2 916,133 - -2.4
Or see this region's nucleotide sequence