Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0843 and Synpcc7942_0844 are separated by 163 nucleotides Synpcc7942_0844 and Synpcc7942_0845 are separated by 63 nucleotides Synpcc7942_0845 and Synpcc7942_0846 are separated by 183 nucleotides
Synpcc7942_0843: Synpcc7942_0843 - hypothetical protein, at 838,504 to 838,935
_0843
Synpcc7942_0844: Synpcc7942_0844 - Phosphoesterase PHP-like, at 839,099 to 839,809
_0844
Synpcc7942_0845: Synpcc7942_0845 - hypothetical protein, at 839,873 to 840,079
_0845
Synpcc7942_0846: Synpcc7942_0846 - hypothetical protein, at 840,263 to 841,081
_0846
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 838.895 kb on - strand at 838.985 kb on + strand at 838.996 kb on + strand at 839.002 kb on - strand at 839.005 kb on + strand at 839.005 kb on + strand at 839.026 kb on - strand at 839.028 kb on + strand at 839.084 kb on - strand at 839.094 kb on - strand at 839.124 kb on - strand at 839.194 kb on + strand, within Synpcc7942_0844 at 839.194 kb on + strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.248 kb on - strand, within Synpcc7942_0844 at 839.252 kb on + strand, within Synpcc7942_0844 at 839.309 kb on + strand, within Synpcc7942_0844 at 839.340 kb on - strand, within Synpcc7942_0844 at 839.341 kb on - strand, within Synpcc7942_0844 at 839.341 kb on - strand, within Synpcc7942_0844 at 839.400 kb on - strand, within Synpcc7942_0844 at 839.401 kb on + strand at 839.401 kb on + strand, within Synpcc7942_0844 at 839.406 kb on + strand, within Synpcc7942_0844 at 839.409 kb on - strand, within Synpcc7942_0844 at 839.414 kb on - strand at 839.414 kb on - strand, within Synpcc7942_0844 at 839.453 kb on + strand, within Synpcc7942_0844 at 839.468 kb on + strand, within Synpcc7942_0844 at 839.470 kb on + strand, within Synpcc7942_0844 at 839.481 kb on + strand, within Synpcc7942_0844 at 839.499 kb on + strand, within Synpcc7942_0844 at 839.504 kb on + strand, within Synpcc7942_0844 at 839.514 kb on - strand, within Synpcc7942_0844 at 839.518 kb on - strand, within Synpcc7942_0844 at 839.576 kb on + strand, within Synpcc7942_0844 at 839.584 kb on - strand, within Synpcc7942_0844 at 839.602 kb on + strand, within Synpcc7942_0844 at 839.620 kb on - strand, within Synpcc7942_0844 at 839.630 kb on + strand, within Synpcc7942_0844 at 839.644 kb on + strand, within Synpcc7942_0844 at 839.654 kb on - strand, within Synpcc7942_0844 at 839.679 kb on + strand, within Synpcc7942_0844 at 839.747 kb on - strand at 839.747 kb on - strand at 839.815 kb on + strand at 839.823 kb on - strand at 839.830 kb on + strand at 839.830 kb on + strand at 839.830 kb on + strand at 839.838 kb on - strand at 839.838 kb on - strand at 839.856 kb on - strand at 839.870 kb on + strand at 839.870 kb on + strand at 839.870 kb on + strand at 839.878 kb on - strand at 839.878 kb on - strand at 839.888 kb on - strand at 839.888 kb on - strand at 839.900 kb on + strand, within Synpcc7942_0845 at 839.924 kb on - strand, within Synpcc7942_0845 at 839.970 kb on - strand, within Synpcc7942_0845 at 839.972 kb on + strand, within Synpcc7942_0845 at 839.990 kb on + strand, within Synpcc7942_0845 at 839.998 kb on - strand, within Synpcc7942_0845 at 840.008 kb on - strand, within Synpcc7942_0845 at 840.008 kb on - strand, within Synpcc7942_0845 at 840.024 kb on + strand, within Synpcc7942_0845 at 840.024 kb on + strand, within Synpcc7942_0845 at 840.029 kb on + strand, within Synpcc7942_0845 at 840.095 kb on + strand at 840.114 kb on + strand at 840.131 kb on + strand at 840.137 kb on + strand at 840.137 kb on + strand at 840.137 kb on + strand at 840.145 kb on - strand at 840.145 kb on - strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.171 kb on + strand at 840.186 kb on - strand at 840.231 kb on + strand at 840.238 kb on - strand at 840.288 kb on - strand at 840.314 kb on - strand at 840.317 kb on + strand at 840.322 kb on - strand at 840.326 kb on + strand at 840.340 kb on + strand at 840.369 kb on - strand, within Synpcc7942_0846 at 840.386 kb on + strand, within Synpcc7942_0846 at 840.389 kb on - strand, within Synpcc7942_0846 at 840.403 kb on - strand, within Synpcc7942_0846 at 840.436 kb on + strand, within Synpcc7942_0846 at 840.439 kb on - strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.482 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.509 kb on - strand at 840.509 kb on - strand, within Synpcc7942_0846 at 840.511 kb on - strand, within Synpcc7942_0846 at 840.528 kb on + strand, within Synpcc7942_0846 at 840.553 kb on - strand, within Synpcc7942_0846 at 840.572 kb on + strand, within Synpcc7942_0846 at 840.572 kb on + strand, within Synpcc7942_0846 at 840.593 kb on + strand, within Synpcc7942_0846 at 840.601 kb on + strand, within Synpcc7942_0846 at 840.603 kb on + strand, within Synpcc7942_0846 at 840.619 kb on - strand, within Synpcc7942_0846 at 840.628 kb on - strand, within Synpcc7942_0846 at 840.634 kb on + strand, within Synpcc7942_0846 at 840.645 kb on - strand, within Synpcc7942_0846 at 840.655 kb on - strand, within Synpcc7942_0846 at 840.660 kb on - strand, within Synpcc7942_0846 at 840.665 kb on - strand, within Synpcc7942_0846 at 840.665 kb on - strand, within Synpcc7942_0846 at 840.686 kb on + strand, within Synpcc7942_0846 at 840.688 kb on + strand, within Synpcc7942_0846 at 840.698 kb on + strand, within Synpcc7942_0846 at 840.707 kb on - strand, within Synpcc7942_0846 at 840.723 kb on - strand, within Synpcc7942_0846 at 840.759 kb on + strand, within Synpcc7942_0846 at 840.767 kb on - strand, within Synpcc7942_0846 at 840.815 kb on + strand, within Synpcc7942_0846 at 840.823 kb on - strand, within Synpcc7942_0846 at 840.823 kb on - strand, within Synpcc7942_0846 at 840.823 kb on - strand, within Synpcc7942_0846 at 840.825 kb on - strand at 840.830 kb on - strand, within Synpcc7942_0846 at 840.845 kb on - strand, within Synpcc7942_0846 at 840.845 kb on - strand, within Synpcc7942_0846 at 840.861 kb on - strand, within Synpcc7942_0846 at 840.886 kb on + strand, within Synpcc7942_0846 at 840.893 kb on - strand, within Synpcc7942_0846 at 840.939 kb on - strand, within Synpcc7942_0846 at 840.948 kb on - strand, within Synpcc7942_0846 at 840.948 kb on - strand, within Synpcc7942_0846 at 840.948 kb on - strand, within Synpcc7942_0846 at 840.961 kb on + strand, within Synpcc7942_0846 at 840.961 kb on + strand, within Synpcc7942_0846 at 840.979 kb on - strand, within Synpcc7942_0846 at 840.998 kb on - strand, within Synpcc7942_0846 at 841.003 kb on - strand at 841.003 kb on - strand at 841.030 kb on + strand at 841.052 kb on - strand at 841.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 838,895 - -1.6 838,985 + -0.3 838,996 + -0.9 839,002 - +0.5 839,005 + -1.0 839,005 + -1.2 839,026 - -0.9 839,028 + +1.9 839,084 - +1.2 839,094 - +1.6 839,124 - -1.2 839,194 + Synpcc7942_0844 0.13 -1.3 839,194 + Synpcc7942_0844 0.13 -0.6 839,202 - Synpcc7942_0844 0.14 -0.8 839,202 - Synpcc7942_0844 0.14 -0.3 839,202 - Synpcc7942_0844 0.14 -1.0 839,222 - Synpcc7942_0844 0.17 -1.3 839,222 - Synpcc7942_0844 0.17 -1.3 839,222 - Synpcc7942_0844 0.17 +0.2 839,222 - Synpcc7942_0844 0.17 -2.6 839,248 - Synpcc7942_0844 0.21 +1.2 839,252 + Synpcc7942_0844 0.22 -0.1 839,309 + Synpcc7942_0844 0.30 -1.5 839,340 - Synpcc7942_0844 0.34 +1.0 839,341 - Synpcc7942_0844 0.34 +0.0 839,341 - Synpcc7942_0844 0.34 +1.0 839,400 - Synpcc7942_0844 0.42 +0.7 839,401 + -0.2 839,401 + Synpcc7942_0844 0.42 +2.0 839,406 + Synpcc7942_0844 0.43 -1.3 839,409 - Synpcc7942_0844 0.44 -1.3 839,414 - -1.0 839,414 - Synpcc7942_0844 0.44 -0.3 839,453 + Synpcc7942_0844 0.50 +1.0 839,468 + Synpcc7942_0844 0.52 +3.0 839,470 + Synpcc7942_0844 0.52 +0.0 839,481 + Synpcc7942_0844 0.54 -0.6 839,499 + Synpcc7942_0844 0.56 -0.4 839,504 + Synpcc7942_0844 0.57 -0.6 839,514 - Synpcc7942_0844 0.58 +0.4 839,518 - Synpcc7942_0844 0.59 -1.0 839,576 + Synpcc7942_0844 0.67 +0.7 839,584 - Synpcc7942_0844 0.68 +0.0 839,602 + Synpcc7942_0844 0.71 -1.5 839,620 - Synpcc7942_0844 0.73 -0.4 839,630 + Synpcc7942_0844 0.75 +0.2 839,644 + Synpcc7942_0844 0.77 -0.6 839,654 - Synpcc7942_0844 0.78 -1.2 839,679 + Synpcc7942_0844 0.82 -0.9 839,747 - -1.0 839,747 - +1.0 839,815 + -1.2 839,823 - -1.3 839,830 + +0.4 839,830 + +1.0 839,830 + +0.4 839,838 - +0.5 839,838 - -0.4 839,856 - +1.0 839,870 + -0.3 839,870 + -1.1 839,870 + +1.0 839,878 - -0.9 839,878 - -0.6 839,888 - -0.2 839,888 - -0.3 839,900 + Synpcc7942_0845 0.13 -0.2 839,924 - Synpcc7942_0845 0.25 -0.7 839,970 - Synpcc7942_0845 0.47 -1.0 839,972 + Synpcc7942_0845 0.48 -1.0 839,990 + Synpcc7942_0845 0.57 +0.4 839,998 - Synpcc7942_0845 0.60 -2.0 840,008 - Synpcc7942_0845 0.65 -2.0 840,008 - Synpcc7942_0845 0.65 -1.6 840,024 + Synpcc7942_0845 0.73 -0.8 840,024 + Synpcc7942_0845 0.73 -1.1 840,029 + Synpcc7942_0845 0.75 +0.2 840,095 + -0.9 840,114 + -1.1 840,131 + -0.5 840,137 + -0.3 840,137 + -0.9 840,137 + -1.7 840,145 - -1.2 840,145 - -1.6 840,147 + -1.3 840,147 + -1.0 840,147 + -2.0 840,147 + -1.4 840,147 + +0.5 840,147 + -0.5 840,147 + -1.5 840,147 + -0.8 840,147 + -0.4 840,147 + -0.8 840,147 + -1.2 840,147 + -1.8 840,147 + +0.0 840,147 + -1.7 840,147 + -0.7 840,147 + +1.1 840,155 - -1.0 840,155 - -0.8 840,155 - -1.1 840,155 - +2.8 840,155 - -0.9 840,155 - -0.1 840,155 - +1.4 840,155 - +1.5 840,155 - -0.8 840,155 - +1.8 840,155 - -1.7 840,155 - -1.8 840,155 - -1.8 840,171 + -0.5 840,186 - -0.5 840,231 + +1.3 840,238 - -1.1 840,288 - -0.6 840,314 - +0.7 840,317 + +0.0 840,322 - +0.7 840,326 + -1.7 840,340 + -1.9 840,369 - Synpcc7942_0846 0.13 +1.0 840,386 + Synpcc7942_0846 0.15 +1.8 840,389 - Synpcc7942_0846 0.15 -0.7 840,403 - Synpcc7942_0846 0.17 +1.0 840,436 + Synpcc7942_0846 0.21 +1.1 840,439 - Synpcc7942_0846 0.21 +0.0 840,462 + Synpcc7942_0846 0.24 +1.5 840,462 + Synpcc7942_0846 0.24 -0.5 840,462 + Synpcc7942_0846 0.24 -0.1 840,482 + Synpcc7942_0846 0.27 -0.8 840,483 + Synpcc7942_0846 0.27 -1.0 840,483 + Synpcc7942_0846 0.27 +2.0 840,483 + Synpcc7942_0846 0.27 +2.4 840,491 - Synpcc7942_0846 0.28 +3.0 840,491 - Synpcc7942_0846 0.28 -0.9 840,491 - Synpcc7942_0846 0.28 -0.7 840,491 - Synpcc7942_0846 0.28 +0.3 840,509 - +0.3 840,509 - Synpcc7942_0846 0.30 -1.6 840,511 - Synpcc7942_0846 0.30 +0.4 840,528 + Synpcc7942_0846 0.32 -0.7 840,553 - Synpcc7942_0846 0.35 -0.7 840,572 + Synpcc7942_0846 0.38 +1.5 840,572 + Synpcc7942_0846 0.38 +0.4 840,593 + Synpcc7942_0846 0.40 -0.7 840,601 + Synpcc7942_0846 0.41 -1.3 840,603 + Synpcc7942_0846 0.42 +1.0 840,619 - Synpcc7942_0846 0.43 +1.0 840,628 - Synpcc7942_0846 0.45 +0.0 840,634 + Synpcc7942_0846 0.45 -1.0 840,645 - Synpcc7942_0846 0.47 -0.1 840,655 - Synpcc7942_0846 0.48 -1.7 840,660 - Synpcc7942_0846 0.48 +0.5 840,665 - Synpcc7942_0846 0.49 -1.4 840,665 - Synpcc7942_0846 0.49 -0.8 840,686 + Synpcc7942_0846 0.52 +0.3 840,688 + Synpcc7942_0846 0.52 -0.4 840,698 + Synpcc7942_0846 0.53 -1.6 840,707 - Synpcc7942_0846 0.54 -0.7 840,723 - Synpcc7942_0846 0.56 -0.8 840,759 + Synpcc7942_0846 0.61 +0.8 840,767 - Synpcc7942_0846 0.62 -0.5 840,815 + Synpcc7942_0846 0.67 -2.4 840,823 - Synpcc7942_0846 0.68 +1.0 840,823 - Synpcc7942_0846 0.68 -0.6 840,823 - Synpcc7942_0846 0.68 +1.4 840,825 - -1.6 840,830 - Synpcc7942_0846 0.69 -0.3 840,845 - Synpcc7942_0846 0.71 -0.5 840,845 - Synpcc7942_0846 0.71 -0.3 840,861 - Synpcc7942_0846 0.73 +1.6 840,886 + Synpcc7942_0846 0.76 -0.5 840,893 - Synpcc7942_0846 0.77 +0.6 840,939 - Synpcc7942_0846 0.83 +0.6 840,948 - Synpcc7942_0846 0.84 +3.0 840,948 - Synpcc7942_0846 0.84 +0.4 840,948 - Synpcc7942_0846 0.84 -0.5 840,961 + Synpcc7942_0846 0.85 +1.4 840,961 + Synpcc7942_0846 0.85 +0.3 840,979 - Synpcc7942_0846 0.87 -1.0 840,998 - Synpcc7942_0846 0.90 +1.0 841,003 - +1.0 841,003 - -1.7 841,030 + -2.3 841,052 - -1.4 841,052 - -1.0
Or see this region's nucleotide sequence