Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0836 and Synpcc7942_0837 overlap by 4 nucleotides Synpcc7942_0837 and Synpcc7942_0838 are separated by 48 nucleotides
Synpcc7942_0836: Synpcc7942_0836 - hypothetical protein, at 831,166 to 832,182
_0836
Synpcc7942_0837: Synpcc7942_0837 - hypothetical protein, at 832,179 to 832,811
_0837
Synpcc7942_0838: Synpcc7942_0838 - Elongator protein 3/MiaB/NifB, at 832,860 to 833,957
_0838
Position (kb) 832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 831.192 kb on + strand at 831.210 kb on - strand at 831.214 kb on - strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.216 kb on + strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.224 kb on - strand at 831.228 kb on + strand at 831.246 kb on - strand at 831.273 kb on - strand, within Synpcc7942_0836 at 831.287 kb on + strand, within Synpcc7942_0836 at 831.289 kb on + strand, within Synpcc7942_0836 at 831.297 kb on - strand, within Synpcc7942_0836 at 831.309 kb on + strand, within Synpcc7942_0836 at 831.312 kb on - strand, within Synpcc7942_0836 at 831.353 kb on + strand, within Synpcc7942_0836 at 831.362 kb on - strand, within Synpcc7942_0836 at 831.362 kb on - strand, within Synpcc7942_0836 at 831.423 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.489 kb on - strand, within Synpcc7942_0836 at 831.499 kb on - strand, within Synpcc7942_0836 at 831.518 kb on + strand, within Synpcc7942_0836 at 831.620 kb on + strand, within Synpcc7942_0836 at 831.634 kb on + strand, within Synpcc7942_0836 at 831.637 kb on - strand, within Synpcc7942_0836 at 831.637 kb on - strand, within Synpcc7942_0836 at 831.650 kb on - strand, within Synpcc7942_0836 at 831.684 kb on - strand, within Synpcc7942_0836 at 831.691 kb on + strand, within Synpcc7942_0836 at 831.707 kb on - strand, within Synpcc7942_0836 at 831.712 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.718 kb on + strand, within Synpcc7942_0836 at 831.726 kb on - strand, within Synpcc7942_0836 at 831.726 kb on - strand, within Synpcc7942_0836 at 831.726 kb on - strand, within Synpcc7942_0836 at 831.728 kb on + strand, within Synpcc7942_0836 at 831.736 kb on - strand, within Synpcc7942_0836 at 831.767 kb on - strand, within Synpcc7942_0836 at 831.771 kb on - strand, within Synpcc7942_0836 at 831.823 kb on + strand, within Synpcc7942_0836 at 831.823 kb on + strand, within Synpcc7942_0836 at 831.825 kb on + strand, within Synpcc7942_0836 at 831.831 kb on - strand, within Synpcc7942_0836 at 831.833 kb on - strand, within Synpcc7942_0836 at 831.848 kb on + strand, within Synpcc7942_0836 at 831.856 kb on - strand, within Synpcc7942_0836 at 831.858 kb on - strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.860 kb on + strand, within Synpcc7942_0836 at 831.862 kb on + strand, within Synpcc7942_0836 at 831.868 kb on - strand, within Synpcc7942_0836 at 831.868 kb on - strand, within Synpcc7942_0836 at 831.923 kb on - strand, within Synpcc7942_0836 at 831.926 kb on - strand, within Synpcc7942_0836 at 831.951 kb on - strand, within Synpcc7942_0836 at 831.964 kb on + strand, within Synpcc7942_0836 at 831.975 kb on - strand, within Synpcc7942_0836 at 831.982 kb on + strand, within Synpcc7942_0836 at 832.017 kb on + strand, within Synpcc7942_0836 at 832.017 kb on - strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.030 kb on + strand, within Synpcc7942_0836 at 832.031 kb on + strand, within Synpcc7942_0836 at 832.038 kb on - strand, within Synpcc7942_0836 at 832.038 kb on - strand, within Synpcc7942_0836 at 832.038 kb on - strand, within Synpcc7942_0836 at 832.080 kb on - strand, within Synpcc7942_0836 at 832.132 kb on + strand at 832.134 kb on - strand at 832.156 kb on + strand at 832.194 kb on - strand at 832.199 kb on + strand at 832.237 kb on + strand at 832.389 kb on - strand, within Synpcc7942_0837 at 832.394 kb on - strand, within Synpcc7942_0837 at 832.439 kb on + strand, within Synpcc7942_0837 at 832.455 kb on + strand, within Synpcc7942_0837 at 832.493 kb on - strand, within Synpcc7942_0837 at 832.514 kb on - strand, within Synpcc7942_0837 at 832.559 kb on - strand, within Synpcc7942_0837 at 832.583 kb on + strand, within Synpcc7942_0837 at 832.616 kb on + strand, within Synpcc7942_0837 at 832.616 kb on + strand at 832.719 kb on - strand, within Synpcc7942_0837 at 832.734 kb on - strand, within Synpcc7942_0837 at 832.734 kb on - strand, within Synpcc7942_0837 at 832.783 kb on - strand at 832.789 kb on - strand at 832.789 kb on - strand at 832.789 kb on - strand at 832.789 kb on - strand at 832.794 kb on - strand at 832.794 kb on - strand at 832.847 kb on + strand at 832.867 kb on + strand at 832.877 kb on + strand at 832.922 kb on - strand at 832.952 kb on - strand at 832.953 kb on + strand at 832.961 kb on - strand at 832.961 kb on - strand at 832.984 kb on - strand, within Synpcc7942_0838 at 833.051 kb on + strand, within Synpcc7942_0838 at 833.097 kb on - strand, within Synpcc7942_0838 at 833.114 kb on - strand, within Synpcc7942_0838 at 833.160 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.179 kb on + strand, within Synpcc7942_0838 at 833.184 kb on - strand, within Synpcc7942_0838 at 833.197 kb on - strand, within Synpcc7942_0838 at 833.242 kb on - strand, within Synpcc7942_0838 at 833.269 kb on + strand, within Synpcc7942_0838 at 833.279 kb on - strand, within Synpcc7942_0838 at 833.284 kb on - strand, within Synpcc7942_0838 at 833.292 kb on - strand, within Synpcc7942_0838 at 833.299 kb on + strand, within Synpcc7942_0838 at 833.304 kb on + strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.308 kb on + strand, within Synpcc7942_0838 at 833.320 kb on + strand, within Synpcc7942_0838 at 833.326 kb on + strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.338 kb on - strand, within Synpcc7942_0838 at 833.346 kb on + strand, within Synpcc7942_0838 at 833.359 kb on - strand, within Synpcc7942_0838 at 833.364 kb on - strand, within Synpcc7942_0838 at 833.382 kb on + strand, within Synpcc7942_0838 at 833.407 kb on + strand, within Synpcc7942_0838 at 833.417 kb on + strand, within Synpcc7942_0838 at 833.425 kb on + strand, within Synpcc7942_0838 at 833.433 kb on - strand, within Synpcc7942_0838 at 833.446 kb on - strand, within Synpcc7942_0838 at 833.474 kb on + strand, within Synpcc7942_0838 at 833.486 kb on + strand, within Synpcc7942_0838 at 833.492 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.509 kb on + strand, within Synpcc7942_0838 at 833.537 kb on - strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.586 kb on + strand, within Synpcc7942_0838 at 833.594 kb on + strand, within Synpcc7942_0838 at 833.601 kb on + strand, within Synpcc7942_0838 at 833.613 kb on - strand, within Synpcc7942_0838 at 833.614 kb on + strand, within Synpcc7942_0838 at 833.637 kb on - strand, within Synpcc7942_0838 at 833.651 kb on + strand, within Synpcc7942_0838 at 833.659 kb on + strand, within Synpcc7942_0838 at 833.712 kb on - strand, within Synpcc7942_0838 at 833.739 kb on - strand, within Synpcc7942_0838 at 833.762 kb on + strand, within Synpcc7942_0838 at 833.809 kb on + strand, within Synpcc7942_0838
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 831,192 + -3.5 831,210 - -0.6 831,214 - +0.0 831,216 + -0.9 831,216 + -1.6 831,216 + -1.7 831,216 + -1.0 831,216 + +0.0 831,216 + -0.7 831,216 + +0.7 831,216 + -0.3 831,216 + -0.3 831,216 + +1.5 831,216 + +0.4 831,216 + +1.0 831,216 + +0.4 831,216 + -0.2 831,216 + -0.8 831,216 + -1.0 831,216 + +0.0 831,216 + +1.0 831,216 + -2.0 831,216 + -1.6 831,216 + +1.3 831,216 + -1.9 831,224 - +1.3 831,224 - -0.7 831,224 - -1.7 831,224 - -0.9 831,224 - -1.1 831,224 - -0.7 831,224 - -0.4 831,224 - -0.5 831,224 - +2.0 831,224 - -0.8 831,224 - -1.2 831,224 - +0.7 831,228 + +1.7 831,246 - -1.2 831,273 - Synpcc7942_0836 0.11 +0.4 831,287 + Synpcc7942_0836 0.12 -0.8 831,289 + Synpcc7942_0836 0.12 -1.0 831,297 - Synpcc7942_0836 0.13 -0.6 831,309 + Synpcc7942_0836 0.14 -1.2 831,312 - Synpcc7942_0836 0.14 -0.5 831,353 + Synpcc7942_0836 0.18 -0.7 831,362 - Synpcc7942_0836 0.19 +2.0 831,362 - Synpcc7942_0836 0.19 -1.0 831,423 - Synpcc7942_0836 0.25 -1.0 831,489 - Synpcc7942_0836 0.32 -1.0 831,489 - Synpcc7942_0836 0.32 +1.0 831,489 - Synpcc7942_0836 0.32 -1.0 831,489 - Synpcc7942_0836 0.32 -1.5 831,489 - Synpcc7942_0836 0.32 +2.0 831,499 - Synpcc7942_0836 0.33 -1.8 831,518 + Synpcc7942_0836 0.35 -0.3 831,620 + Synpcc7942_0836 0.45 -0.6 831,634 + Synpcc7942_0836 0.46 -0.8 831,637 - Synpcc7942_0836 0.46 +0.0 831,637 - Synpcc7942_0836 0.46 -0.7 831,650 - Synpcc7942_0836 0.48 -0.4 831,684 - Synpcc7942_0836 0.51 -1.4 831,691 + Synpcc7942_0836 0.52 -0.4 831,707 - Synpcc7942_0836 0.53 -1.7 831,712 + Synpcc7942_0836 0.54 +0.7 831,718 + Synpcc7942_0836 0.54 -0.6 831,718 + Synpcc7942_0836 0.54 -0.7 831,718 + Synpcc7942_0836 0.54 -2.0 831,718 + Synpcc7942_0836 0.54 -0.1 831,718 + Synpcc7942_0836 0.54 -3.0 831,726 - Synpcc7942_0836 0.55 +1.3 831,726 - Synpcc7942_0836 0.55 +1.0 831,726 - Synpcc7942_0836 0.55 +0.4 831,728 + Synpcc7942_0836 0.55 +1.0 831,736 - Synpcc7942_0836 0.56 +0.3 831,767 - Synpcc7942_0836 0.59 -0.5 831,771 - Synpcc7942_0836 0.59 +0.0 831,823 + Synpcc7942_0836 0.65 -0.9 831,823 + Synpcc7942_0836 0.65 -1.3 831,825 + Synpcc7942_0836 0.65 +0.1 831,831 - Synpcc7942_0836 0.65 +1.0 831,833 - Synpcc7942_0836 0.66 -1.6 831,848 + Synpcc7942_0836 0.67 -0.6 831,856 - Synpcc7942_0836 0.68 -1.4 831,858 - Synpcc7942_0836 0.68 -0.8 831,860 + Synpcc7942_0836 0.68 -0.9 831,860 + Synpcc7942_0836 0.68 -1.1 831,860 + Synpcc7942_0836 0.68 +0.4 831,860 + Synpcc7942_0836 0.68 +0.4 831,860 + Synpcc7942_0836 0.68 +1.0 831,860 + Synpcc7942_0836 0.68 -0.9 831,860 + Synpcc7942_0836 0.68 -1.3 831,862 + Synpcc7942_0836 0.68 -0.1 831,868 - Synpcc7942_0836 0.69 -0.7 831,868 - Synpcc7942_0836 0.69 -1.0 831,923 - Synpcc7942_0836 0.74 +0.0 831,926 - Synpcc7942_0836 0.75 -1.8 831,951 - Synpcc7942_0836 0.77 -1.5 831,964 + Synpcc7942_0836 0.78 -0.6 831,975 - Synpcc7942_0836 0.80 -2.4 831,982 + Synpcc7942_0836 0.80 +0.2 832,017 + Synpcc7942_0836 0.84 -2.7 832,017 - Synpcc7942_0836 0.84 -1.0 832,030 + Synpcc7942_0836 0.85 -1.0 832,030 + Synpcc7942_0836 0.85 -0.0 832,030 + Synpcc7942_0836 0.85 +1.3 832,030 + Synpcc7942_0836 0.85 +1.0 832,031 + Synpcc7942_0836 0.85 +2.0 832,038 - Synpcc7942_0836 0.86 -1.7 832,038 - Synpcc7942_0836 0.86 -2.4 832,038 - Synpcc7942_0836 0.86 -1.9 832,080 - Synpcc7942_0836 0.90 +0.3 832,132 + -0.2 832,134 - -1.0 832,156 + +0.2 832,194 - -0.3 832,199 + -2.2 832,237 + -0.7 832,389 - Synpcc7942_0837 0.33 -1.5 832,394 - Synpcc7942_0837 0.34 -1.3 832,439 + Synpcc7942_0837 0.41 -1.0 832,455 + Synpcc7942_0837 0.44 +1.0 832,493 - Synpcc7942_0837 0.50 -1.2 832,514 - Synpcc7942_0837 0.53 -0.9 832,559 - Synpcc7942_0837 0.60 -0.7 832,583 + Synpcc7942_0837 0.64 +1.0 832,616 + Synpcc7942_0837 0.69 +2.6 832,616 + -0.6 832,719 - Synpcc7942_0837 0.85 +0.0 832,734 - Synpcc7942_0837 0.88 -1.2 832,734 - Synpcc7942_0837 0.88 -0.6 832,783 - -1.7 832,789 - -0.4 832,789 - -1.1 832,789 - +3.0 832,789 - +0.2 832,794 - -0.9 832,794 - -0.4 832,847 + -0.6 832,867 + -0.3 832,877 + +1.0 832,922 - -0.9 832,952 - -0.9 832,953 + -2.0 832,961 - -0.8 832,961 - +1.2 832,984 - Synpcc7942_0838 0.11 -0.3 833,051 + Synpcc7942_0838 0.17 -0.1 833,097 - Synpcc7942_0838 0.22 +1.0 833,114 - Synpcc7942_0838 0.23 +1.0 833,160 - Synpcc7942_0838 0.27 -1.7 833,166 - Synpcc7942_0838 0.28 -0.4 833,166 - Synpcc7942_0838 0.28 -0.1 833,166 - Synpcc7942_0838 0.28 -1.2 833,168 + Synpcc7942_0838 0.28 +2.0 833,168 + Synpcc7942_0838 0.28 -1.1 833,168 + Synpcc7942_0838 0.28 -0.6 833,168 + Synpcc7942_0838 0.28 -0.6 833,168 + Synpcc7942_0838 0.28 +1.0 833,168 + Synpcc7942_0838 0.28 +1.0 833,176 - Synpcc7942_0838 0.29 +1.0 833,176 - Synpcc7942_0838 0.29 -0.9 833,176 - Synpcc7942_0838 0.29 +1.0 833,179 + Synpcc7942_0838 0.29 +0.0 833,184 - Synpcc7942_0838 0.30 +1.0 833,197 - Synpcc7942_0838 0.31 -0.5 833,242 - Synpcc7942_0838 0.35 -1.4 833,269 + Synpcc7942_0838 0.37 -1.0 833,279 - Synpcc7942_0838 0.38 -1.2 833,284 - Synpcc7942_0838 0.39 +2.6 833,292 - Synpcc7942_0838 0.39 -1.4 833,299 + Synpcc7942_0838 0.40 +1.0 833,304 + Synpcc7942_0838 0.40 -0.6 833,307 - Synpcc7942_0838 0.41 +1.4 833,307 - Synpcc7942_0838 0.41 +0.0 833,308 + Synpcc7942_0838 0.41 -0.5 833,320 + Synpcc7942_0838 0.42 -1.6 833,326 + Synpcc7942_0838 0.42 -2.6 833,328 - Synpcc7942_0838 0.43 +1.0 833,328 - Synpcc7942_0838 0.43 +0.4 833,338 - Synpcc7942_0838 0.44 +1.0 833,346 + Synpcc7942_0838 0.44 -2.2 833,359 - Synpcc7942_0838 0.45 +0.5 833,364 - Synpcc7942_0838 0.46 +0.2 833,382 + Synpcc7942_0838 0.48 -0.6 833,407 + Synpcc7942_0838 0.50 +0.6 833,417 + Synpcc7942_0838 0.51 +0.4 833,425 + Synpcc7942_0838 0.51 -1.2 833,433 - Synpcc7942_0838 0.52 -0.3 833,446 - Synpcc7942_0838 0.53 -1.4 833,474 + Synpcc7942_0838 0.56 +0.1 833,486 + Synpcc7942_0838 0.57 -0.4 833,492 - Synpcc7942_0838 0.58 +0.0 833,494 - Synpcc7942_0838 0.58 +0.3 833,494 - Synpcc7942_0838 0.58 -1.7 833,494 - Synpcc7942_0838 0.58 +0.0 833,509 + Synpcc7942_0838 0.59 -1.0 833,537 - Synpcc7942_0838 0.62 -0.6 833,544 + Synpcc7942_0838 0.62 -1.8 833,544 + Synpcc7942_0838 0.62 -1.1 833,544 + Synpcc7942_0838 0.62 -1.0 833,586 + Synpcc7942_0838 0.66 +1.0 833,594 + Synpcc7942_0838 0.67 +0.3 833,601 + Synpcc7942_0838 0.67 -0.7 833,613 - Synpcc7942_0838 0.69 -2.2 833,614 + Synpcc7942_0838 0.69 -1.0 833,637 - Synpcc7942_0838 0.71 +0.8 833,651 + Synpcc7942_0838 0.72 +0.1 833,659 + Synpcc7942_0838 0.73 -1.9 833,712 - Synpcc7942_0838 0.78 -1.0 833,739 - Synpcc7942_0838 0.80 -2.8 833,762 + Synpcc7942_0838 0.82 -0.2 833,809 + Synpcc7942_0838 0.86 -1.3
Or see this region's nucleotide sequence