Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0754

Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0753 and Synpcc7942_0754 are separated by 21 nucleotidesSynpcc7942_0754 and Synpcc7942_0755 overlap by 1 nucleotidesSynpcc7942_0755 and Synpcc7942_0756 are separated by 396 nucleotides Synpcc7942_0753: Synpcc7942_0753 - phage late control gene D protein GPD, at 747,719 to 749,161 _0753 Synpcc7942_0754: Synpcc7942_0754 - hypothetical protein, at 749,183 to 749,431 _0754 Synpcc7942_0755: Synpcc7942_0755 - hypothetical protein, at 749,431 to 750,009 _0755 Synpcc7942_0756: Synpcc7942_0756 - chain A, D20c mutant of T4 lysozyme, at 750,406 to 750,870 _0756 Position (kb) 749 750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 748.195 kb on - strand, within Synpcc7942_0753at 748.201 kb on + strand, within Synpcc7942_0753at 748.209 kb on + strand, within Synpcc7942_0753at 748.211 kb on + strand, within Synpcc7942_0753at 748.224 kb on - strand, within Synpcc7942_0753at 748.241 kb on + strand, within Synpcc7942_0753at 748.317 kb on - strand, within Synpcc7942_0753at 748.331 kb on - strandat 748.346 kb on + strand, within Synpcc7942_0753at 748.346 kb on + strand, within Synpcc7942_0753at 748.361 kb on + strand, within Synpcc7942_0753at 748.361 kb on + strandat 748.369 kb on - strand, within Synpcc7942_0753at 748.369 kb on - strand, within Synpcc7942_0753at 748.369 kb on - strand, within Synpcc7942_0753at 748.372 kb on + strand, within Synpcc7942_0753at 748.386 kb on + strand, within Synpcc7942_0753at 748.394 kb on - strand, within Synpcc7942_0753at 748.404 kb on - strand, within Synpcc7942_0753at 748.415 kb on - strand, within Synpcc7942_0753at 748.417 kb on + strand, within Synpcc7942_0753at 748.417 kb on + strand, within Synpcc7942_0753at 748.417 kb on + strand, within Synpcc7942_0753at 748.417 kb on + strand, within Synpcc7942_0753at 748.425 kb on - strand, within Synpcc7942_0753at 748.425 kb on - strand, within Synpcc7942_0753at 748.436 kb on - strand, within Synpcc7942_0753at 748.445 kb on + strand, within Synpcc7942_0753at 748.445 kb on + strand, within Synpcc7942_0753at 748.445 kb on + strand, within Synpcc7942_0753at 748.452 kb on - strand, within Synpcc7942_0753at 748.452 kb on - strand, within Synpcc7942_0753at 748.453 kb on - strand, within Synpcc7942_0753at 748.453 kb on - strand, within Synpcc7942_0753at 748.453 kb on - strand, within Synpcc7942_0753at 748.453 kb on - strand, within Synpcc7942_0753at 748.476 kb on - strand, within Synpcc7942_0753at 748.521 kb on + strand, within Synpcc7942_0753at 748.526 kb on - strand, within Synpcc7942_0753at 748.528 kb on + strand, within Synpcc7942_0753at 748.545 kb on - strandat 748.576 kb on - strand, within Synpcc7942_0753at 748.608 kb on - strand, within Synpcc7942_0753at 748.624 kb on - strand, within Synpcc7942_0753at 748.628 kb on + strand, within Synpcc7942_0753at 748.634 kb on - strand, within Synpcc7942_0753at 748.636 kb on - strand, within Synpcc7942_0753at 748.649 kb on + strand, within Synpcc7942_0753at 748.659 kb on - strand, within Synpcc7942_0753at 748.698 kb on - strand, within Synpcc7942_0753at 748.712 kb on + strand, within Synpcc7942_0753at 748.727 kb on + strand, within Synpcc7942_0753at 748.735 kb on - strand, within Synpcc7942_0753at 748.780 kb on + strand, within Synpcc7942_0753at 748.780 kb on + strand, within Synpcc7942_0753at 748.780 kb on + strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.788 kb on - strand, within Synpcc7942_0753at 748.796 kb on - strand, within Synpcc7942_0753at 748.817 kb on - strand, within Synpcc7942_0753at 748.822 kb on - strand, within Synpcc7942_0753at 748.822 kb on - strand, within Synpcc7942_0753at 748.849 kb on + strand, within Synpcc7942_0753at 748.885 kb on + strand, within Synpcc7942_0753at 748.892 kb on + strand, within Synpcc7942_0753at 748.892 kb on + strand, within Synpcc7942_0753at 748.893 kb on - strand, within Synpcc7942_0753at 748.895 kb on + strand, within Synpcc7942_0753at 748.903 kb on - strand, within Synpcc7942_0753at 748.903 kb on - strand, within Synpcc7942_0753at 748.950 kb on + strand, within Synpcc7942_0753at 748.968 kb on + strand, within Synpcc7942_0753at 748.968 kb on + strand, within Synpcc7942_0753at 748.968 kb on + strand, within Synpcc7942_0753at 748.968 kb on + strand, within Synpcc7942_0753at 748.968 kb on + strand, within Synpcc7942_0753at 748.976 kb on - strand, within Synpcc7942_0753at 749.015 kb on + strand, within Synpcc7942_0753at 749.017 kb on - strandat 749.017 kb on - strandat 749.034 kb on - strandat 749.034 kb on - strandat 749.049 kb on + strandat 749.051 kb on - strandat 749.055 kb on + strandat 749.064 kb on - strandat 749.068 kb on + strandat 749.088 kb on - strandat 749.113 kb on + strandat 749.120 kb on + strandat 749.122 kb on + strandat 749.130 kb on - strandat 749.198 kb on - strandat 749.212 kb on - strand, within Synpcc7942_0754at 749.237 kb on + strand, within Synpcc7942_0754at 749.269 kb on - strand, within Synpcc7942_0754at 749.291 kb on + strand, within Synpcc7942_0754at 749.296 kb on + strand, within Synpcc7942_0754at 749.296 kb on + strand, within Synpcc7942_0754at 749.296 kb on + strand, within Synpcc7942_0754at 749.310 kb on + strand, within Synpcc7942_0754at 749.314 kb on - strand, within Synpcc7942_0754at 749.319 kb on - strand, within Synpcc7942_0754at 749.376 kb on - strand, within Synpcc7942_0754at 749.414 kb on + strandat 749.426 kb on + strandat 749.438 kb on + strandat 749.455 kb on - strandat 749.492 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.545 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.555 kb on + strand, within Synpcc7942_0755at 749.558 kb on - strand, within Synpcc7942_0755at 749.558 kb on - strand, within Synpcc7942_0755at 749.558 kb on - strand, within Synpcc7942_0755at 749.565 kb on + strand, within Synpcc7942_0755at 749.565 kb on + strand, within Synpcc7942_0755at 749.565 kb on + strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.601 kb on - strand, within Synpcc7942_0755at 749.611 kb on - strand, within Synpcc7942_0755at 749.614 kb on + strand, within Synpcc7942_0755at 749.614 kb on + strand, within Synpcc7942_0755at 749.622 kb on - strand, within Synpcc7942_0755at 749.622 kb on - strand, within Synpcc7942_0755at 749.627 kb on + strand, within Synpcc7942_0755at 749.651 kb on + strand, within Synpcc7942_0755at 749.659 kb on - strand, within Synpcc7942_0755at 749.661 kb on + strand, within Synpcc7942_0755at 749.668 kb on - strand, within Synpcc7942_0755at 749.670 kb on - strand, within Synpcc7942_0755at 749.695 kb on - strand, within Synpcc7942_0755at 749.715 kb on - strand, within Synpcc7942_0755at 749.757 kb on - strand, within Synpcc7942_0755at 749.757 kb on - strand, within Synpcc7942_0755at 749.775 kb on + strand, within Synpcc7942_0755at 749.788 kb on + strand, within Synpcc7942_0755at 749.840 kb on + strand, within Synpcc7942_0755at 749.848 kb on - strand, within Synpcc7942_0755at 749.848 kb on - strand, within Synpcc7942_0755at 749.848 kb on - strand, within Synpcc7942_0755at 749.858 kb on + strand, within Synpcc7942_0755at 749.863 kb on + strand, within Synpcc7942_0755at 749.871 kb on - strand, within Synpcc7942_0755at 749.878 kb on + strand, within Synpcc7942_0755at 749.879 kb on - strand, within Synpcc7942_0755at 749.902 kb on + strand, within Synpcc7942_0755at 749.922 kb on - strand, within Synpcc7942_0755at 749.927 kb on - strand, within Synpcc7942_0755at 749.954 kb on - strandat 749.973 kb on + strandat 749.973 kb on - strandat 749.993 kb on - strandat 750.003 kb on - strandat 750.039 kb on - strandat 750.039 kb on - strandat 750.068 kb on - strandat 750.103 kb on - strandat 750.118 kb on + strandat 750.134 kb on + strandat 750.169 kb on + strandat 750.187 kb on - strandat 750.211 kb on - strandat 750.245 kb on - strandat 750.250 kb on + strandat 750.331 kb on + strandat 750.339 kb on - strandat 750.348 kb on - strandat 750.352 kb on + strandat 750.354 kb on - strandat 750.354 kb on - strandat 750.355 kb on + strandat 750.360 kb on - strandat 750.363 kb on - strandat 750.390 kb on + strandat 750.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
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748,195 - Synpcc7942_0753 0.33 -0.5
748,201 + Synpcc7942_0753 0.33 -0.6
748,209 + Synpcc7942_0753 0.34 +1.6
748,211 + Synpcc7942_0753 0.34 +1.0
748,224 - Synpcc7942_0753 0.35 -0.4
748,241 + Synpcc7942_0753 0.36 +1.7
748,317 - Synpcc7942_0753 0.41 -1.2
748,331 - -1.2
748,346 + Synpcc7942_0753 0.43 -1.0
748,346 + Synpcc7942_0753 0.43 -0.7
748,361 + Synpcc7942_0753 0.44 -1.0
748,361 + -1.0
748,369 - Synpcc7942_0753 0.45 +1.0
748,369 - Synpcc7942_0753 0.45 -1.4
748,369 - Synpcc7942_0753 0.45 -0.8
748,372 + Synpcc7942_0753 0.45 -0.6
748,386 + Synpcc7942_0753 0.46 -0.4
748,394 - Synpcc7942_0753 0.47 +2.0
748,404 - Synpcc7942_0753 0.47 -1.0
748,415 - Synpcc7942_0753 0.48 +1.0
748,417 + Synpcc7942_0753 0.48 -0.8
748,417 + Synpcc7942_0753 0.48 -0.6
748,417 + Synpcc7942_0753 0.48 -0.9
748,417 + Synpcc7942_0753 0.48 -0.5
748,425 - Synpcc7942_0753 0.49 +1.0
748,425 - Synpcc7942_0753 0.49 -1.1
748,436 - Synpcc7942_0753 0.50 +1.0
748,445 + Synpcc7942_0753 0.50 -0.7
748,445 + Synpcc7942_0753 0.50 -0.0
748,445 + Synpcc7942_0753 0.50 -0.0
748,452 - Synpcc7942_0753 0.51 -0.6
748,452 - Synpcc7942_0753 0.51 +0.5
748,453 - Synpcc7942_0753 0.51 +0.8
748,453 - Synpcc7942_0753 0.51 -0.6
748,453 - Synpcc7942_0753 0.51 -0.8
748,453 - Synpcc7942_0753 0.51 -0.1
748,476 - Synpcc7942_0753 0.52 +0.5
748,521 + Synpcc7942_0753 0.56 +1.0
748,526 - Synpcc7942_0753 0.56 -1.4
748,528 + Synpcc7942_0753 0.56 -0.6
748,545 - +0.9
748,576 - Synpcc7942_0753 0.59 -0.7
748,608 - Synpcc7942_0753 0.62 -2.2
748,624 - Synpcc7942_0753 0.63 +2.0
748,628 + Synpcc7942_0753 0.63 +0.2
748,634 - Synpcc7942_0753 0.63 -0.3
748,636 - Synpcc7942_0753 0.64 +0.7
748,649 + Synpcc7942_0753 0.64 -0.6
748,659 - Synpcc7942_0753 0.65 +0.6
748,698 - Synpcc7942_0753 0.68 -2.2
748,712 + Synpcc7942_0753 0.69 +1.0
748,727 + Synpcc7942_0753 0.70 -1.2
748,735 - Synpcc7942_0753 0.70 +1.5
748,780 + Synpcc7942_0753 0.74 -1.9
748,780 + Synpcc7942_0753 0.74 -0.0
748,780 + Synpcc7942_0753 0.74 -0.0
748,788 - Synpcc7942_0753 0.74 -1.2
748,788 - Synpcc7942_0753 0.74 -0.7
748,788 - Synpcc7942_0753 0.74 -0.0
748,788 - Synpcc7942_0753 0.74 -0.0
748,788 - Synpcc7942_0753 0.74 -0.7
748,788 - Synpcc7942_0753 0.74 +1.0
748,788 - Synpcc7942_0753 0.74 +0.6
748,788 - Synpcc7942_0753 0.74 -2.2
748,796 - Synpcc7942_0753 0.75 -0.6
748,817 - Synpcc7942_0753 0.76 -0.2
748,822 - Synpcc7942_0753 0.76 +0.6
748,822 - Synpcc7942_0753 0.76 -0.6
748,849 + Synpcc7942_0753 0.78 -0.0
748,885 + Synpcc7942_0753 0.81 -0.6
748,892 + Synpcc7942_0753 0.81 -0.6
748,892 + Synpcc7942_0753 0.81 +0.5
748,893 - Synpcc7942_0753 0.81 +1.0
748,895 + Synpcc7942_0753 0.81 -1.4
748,903 - Synpcc7942_0753 0.82 -2.3
748,903 - Synpcc7942_0753 0.82 +1.0
748,950 + Synpcc7942_0753 0.85 -0.0
748,968 + Synpcc7942_0753 0.87 +3.3
748,968 + Synpcc7942_0753 0.87 -0.6
748,968 + Synpcc7942_0753 0.87 +1.6
748,968 + Synpcc7942_0753 0.87 -0.6
748,968 + Synpcc7942_0753 0.87 -0.7
748,976 - Synpcc7942_0753 0.87 +0.2
749,015 + Synpcc7942_0753 0.90 +0.4
749,017 - -0.8
749,017 - +1.0
749,034 - +1.0
749,034 - -0.9
749,049 + +0.8
749,051 - -1.6
749,055 + +0.0
749,064 - -1.3
749,068 + -0.0
749,088 - +0.7
749,113 + -0.0
749,120 + -0.9
749,122 + -0.9
749,130 - -3.2
749,198 - -1.0
749,212 - Synpcc7942_0754 0.12 +0.2
749,237 + Synpcc7942_0754 0.22 -2.7
749,269 - Synpcc7942_0754 0.35 -0.0
749,291 + Synpcc7942_0754 0.43 -0.9
749,296 + Synpcc7942_0754 0.45 -2.0
749,296 + Synpcc7942_0754 0.45 -1.8
749,296 + Synpcc7942_0754 0.45 +0.1
749,310 + Synpcc7942_0754 0.51 -0.6
749,314 - Synpcc7942_0754 0.53 -0.7
749,319 - Synpcc7942_0754 0.55 -0.0
749,376 - Synpcc7942_0754 0.78 -0.7
749,414 + +2.0
749,426 + -0.2
749,438 + +2.6
749,455 - +2.0
749,492 - Synpcc7942_0755 0.11 +0.4
749,497 - Synpcc7942_0755 0.11 -0.8
749,497 - Synpcc7942_0755 0.11 +1.0
749,497 - Synpcc7942_0755 0.11 +1.0
749,497 - Synpcc7942_0755 0.11 +1.0
749,517 - Synpcc7942_0755 0.15 -2.1
749,517 - Synpcc7942_0755 0.15 -1.0
749,517 - Synpcc7942_0755 0.15 +0.3
749,517 - Synpcc7942_0755 0.15 -1.3
749,517 - Synpcc7942_0755 0.15 -1.9
749,517 - Synpcc7942_0755 0.15 -0.2
749,545 + Synpcc7942_0755 0.20 -1.0
749,550 + Synpcc7942_0755 0.21 -0.7
749,550 + Synpcc7942_0755 0.21 +0.2
749,550 + Synpcc7942_0755 0.21 +1.5
749,550 + Synpcc7942_0755 0.21 +1.0
749,555 + Synpcc7942_0755 0.21 +0.7
749,558 - Synpcc7942_0755 0.22 -1.1
749,558 - Synpcc7942_0755 0.22 -1.6
749,558 - Synpcc7942_0755 0.22 -0.9
749,565 + Synpcc7942_0755 0.23 +1.0
749,565 + Synpcc7942_0755 0.23 -1.3
749,565 + Synpcc7942_0755 0.23 -0.2
749,573 - Synpcc7942_0755 0.25 +0.2
749,573 - Synpcc7942_0755 0.25 -0.0
749,573 - Synpcc7942_0755 0.25 -1.9
749,573 - Synpcc7942_0755 0.25 -1.1
749,573 - Synpcc7942_0755 0.25 -1.3
749,573 - Synpcc7942_0755 0.25 -0.6
749,601 - Synpcc7942_0755 0.29 -0.8
749,611 - Synpcc7942_0755 0.31 -1.8
749,614 + Synpcc7942_0755 0.32 -0.3
749,614 + Synpcc7942_0755 0.32 -0.0
749,622 - Synpcc7942_0755 0.33 -1.4
749,622 - Synpcc7942_0755 0.33 -0.3
749,627 + Synpcc7942_0755 0.34 -0.5
749,651 + Synpcc7942_0755 0.38 +0.7
749,659 - Synpcc7942_0755 0.39 -1.4
749,661 + Synpcc7942_0755 0.40 -0.3
749,668 - Synpcc7942_0755 0.41 +2.0
749,670 - Synpcc7942_0755 0.41 +0.4
749,695 - Synpcc7942_0755 0.46 -1.3
749,715 - Synpcc7942_0755 0.49 -1.1
749,757 - Synpcc7942_0755 0.56 +1.0
749,757 - Synpcc7942_0755 0.56 -0.2
749,775 + Synpcc7942_0755 0.59 -1.0
749,788 + Synpcc7942_0755 0.62 -0.2
749,840 + Synpcc7942_0755 0.71 +0.1
749,848 - Synpcc7942_0755 0.72 -0.6
749,848 - Synpcc7942_0755 0.72 -0.4
749,848 - Synpcc7942_0755 0.72 +1.0
749,858 + Synpcc7942_0755 0.74 -1.2
749,863 + Synpcc7942_0755 0.75 -1.0
749,871 - Synpcc7942_0755 0.76 +1.6
749,878 + Synpcc7942_0755 0.77 -0.2
749,879 - Synpcc7942_0755 0.77 -1.3
749,902 + Synpcc7942_0755 0.81 -0.3
749,922 - Synpcc7942_0755 0.85 +1.0
749,927 - Synpcc7942_0755 0.86 -0.8
749,954 - -1.0
749,973 + +1.0
749,973 - -2.3
749,993 - +0.1
750,003 - -0.8
750,039 - -0.6
750,039 - -0.7
750,068 - -0.9
750,103 - -0.6
750,118 + +0.6
750,134 + -0.2
750,169 + +2.0
750,187 - -1.6
750,211 - +2.0
750,245 - -0.5
750,250 + +1.0
750,331 + -0.4
750,339 - -0.2
750,348 - -0.0
750,352 + +2.0
750,354 - -0.0
750,354 - +1.2
750,355 + -0.6
750,360 - +2.0
750,363 - +2.6
750,390 + -1.4
750,417 + +1.0

Or see this region's nucleotide sequence