Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0724

Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0722 and Synpcc7942_0723 are separated by 296 nucleotidesSynpcc7942_0723 and Synpcc7942_0724 are separated by 40 nucleotidesSynpcc7942_0724 and Synpcc7942_0725 are separated by 218 nucleotides Synpcc7942_0722: Synpcc7942_0722 - hypothetical protein, at 715,943 to 717,025 _0722 Synpcc7942_0723: Synpcc7942_0723 - hypothetical protein, at 717,322 to 717,963 _0723 Synpcc7942_0724: Synpcc7942_0724 - hypothetical protein, at 718,004 to 718,447 _0724 Synpcc7942_0725: Synpcc7942_0725 - DEAD/DEAH box helicase-like, at 718,666 to 720,075 _0725 Position (kb) 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 717.112 kb on + strandat 717.167 kb on + strandat 717.167 kb on + strandat 717.167 kb on + strandat 717.175 kb on - strandat 717.175 kb on - strandat 717.204 kb on + strandat 717.204 kb on + strandat 717.212 kb on - strandat 717.212 kb on - strandat 717.233 kb on - strandat 717.271 kb on + strandat 717.271 kb on + strandat 717.284 kb on + strandat 717.284 kb on + strandat 717.284 kb on + strandat 717.287 kb on - strandat 717.290 kb on + strandat 717.309 kb on + strandat 717.317 kb on - strandat 717.317 kb on - strandat 717.368 kb on - strandat 718.094 kb on + strand, within Synpcc7942_0724at 718.100 kb on - strand, within Synpcc7942_0724at 718.100 kb on - strand, within Synpcc7942_0724at 718.102 kb on - strand, within Synpcc7942_0724at 718.147 kb on + strand, within Synpcc7942_0724at 718.160 kb on - strand, within Synpcc7942_0724at 718.161 kb on + strand, within Synpcc7942_0724at 718.193 kb on + strand, within Synpcc7942_0724at 718.193 kb on + strand, within Synpcc7942_0724at 718.193 kb on + strand, within Synpcc7942_0724at 718.193 kb on + strand, within Synpcc7942_0724at 718.203 kb on + strand, within Synpcc7942_0724at 718.218 kb on + strand, within Synpcc7942_0724at 718.218 kb on + strand, within Synpcc7942_0724at 718.218 kb on - strand, within Synpcc7942_0724at 718.238 kb on + strand, within Synpcc7942_0724at 718.244 kb on - strand, within Synpcc7942_0724at 718.251 kb on + strand, within Synpcc7942_0724at 718.251 kb on - strand, within Synpcc7942_0724at 718.319 kb on - strand, within Synpcc7942_0724at 718.352 kb on + strand, within Synpcc7942_0724at 718.352 kb on + strand, within Synpcc7942_0724at 718.358 kb on - strand, within Synpcc7942_0724at 718.360 kb on - strand, within Synpcc7942_0724at 718.365 kb on + strand, within Synpcc7942_0724at 718.365 kb on + strand, within Synpcc7942_0724at 718.365 kb on + strand, within Synpcc7942_0724at 718.365 kb on + strand, within Synpcc7942_0724at 718.373 kb on - strand, within Synpcc7942_0724at 718.373 kb on - strand, within Synpcc7942_0724at 718.373 kb on - strand, within Synpcc7942_0724at 718.373 kb on - strand, within Synpcc7942_0724at 718.373 kb on - strand, within Synpcc7942_0724at 718.384 kb on + strand, within Synpcc7942_0724at 718.391 kb on + strand, within Synpcc7942_0724at 718.391 kb on + strand, within Synpcc7942_0724at 718.396 kb on + strand, within Synpcc7942_0724at 718.414 kb on - strandat 718.414 kb on - strandat 718.414 kb on - strandat 718.455 kb on + strandat 718.455 kb on + strandat 718.455 kb on + strandat 718.466 kb on + strandat 718.466 kb on + strandat 718.473 kb on - strandat 718.474 kb on + strandat 718.482 kb on - strandat 718.482 kb on - strandat 718.482 kb on - strandat 718.519 kb on - strandat 718.521 kb on - strandat 718.730 kb on - strandat 718.730 kb on - strandat 718.781 kb on - strandat 718.801 kb on + strandat 718.809 kb on + strand, within Synpcc7942_0725at 718.809 kb on + strand, within Synpcc7942_0725at 718.819 kb on + strand, within Synpcc7942_0725at 718.836 kb on + strand, within Synpcc7942_0725at 718.838 kb on + strand, within Synpcc7942_0725at 718.838 kb on + strand, within Synpcc7942_0725at 718.838 kb on + strand, within Synpcc7942_0725at 718.846 kb on - strand, within Synpcc7942_0725at 718.846 kb on - strand, within Synpcc7942_0725at 718.848 kb on + strand, within Synpcc7942_0725at 718.855 kb on + strand, within Synpcc7942_0725at 718.871 kb on - strand, within Synpcc7942_0725at 718.901 kb on + strand, within Synpcc7942_0725at 718.915 kb on + strand, within Synpcc7942_0725at 718.940 kb on + strand, within Synpcc7942_0725at 718.940 kb on + strand, within Synpcc7942_0725at 718.950 kb on + strand, within Synpcc7942_0725at 718.950 kb on + strand, within Synpcc7942_0725at 718.963 kb on - strand, within Synpcc7942_0725at 718.970 kb on - strand, within Synpcc7942_0725at 719.000 kb on + strand, within Synpcc7942_0725at 719.019 kb on + strand, within Synpcc7942_0725at 719.027 kb on - strand, within Synpcc7942_0725at 719.027 kb on - strand, within Synpcc7942_0725at 719.032 kb on - strand, within Synpcc7942_0725at 719.033 kb on - strand, within Synpcc7942_0725at 719.038 kb on + strand, within Synpcc7942_0725at 719.046 kb on - strand, within Synpcc7942_0725at 719.061 kb on + strand, within Synpcc7942_0725at 719.062 kb on + strand, within Synpcc7942_0725at 719.072 kb on - strand, within Synpcc7942_0725at 719.083 kb on - strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.090 kb on + strand, within Synpcc7942_0725at 719.098 kb on - strand, within Synpcc7942_0725at 719.102 kb on + strand, within Synpcc7942_0725at 719.110 kb on + strand, within Synpcc7942_0725at 719.110 kb on - strand, within Synpcc7942_0725at 719.110 kb on - strand, within Synpcc7942_0725at 719.134 kb on - strand, within Synpcc7942_0725at 719.134 kb on - strand, within Synpcc7942_0725at 719.164 kb on + strand, within Synpcc7942_0725at 719.182 kb on - strand, within Synpcc7942_0725at 719.182 kb on - strand, within Synpcc7942_0725at 719.188 kb on + strand, within Synpcc7942_0725at 719.188 kb on + strand, within Synpcc7942_0725at 719.229 kb on + strand, within Synpcc7942_0725at 719.247 kb on - strand, within Synpcc7942_0725at 719.273 kb on + strand, within Synpcc7942_0725at 719.274 kb on + strand, within Synpcc7942_0725at 719.280 kb on + strand, within Synpcc7942_0725at 719.280 kb on + strand, within Synpcc7942_0725at 719.289 kb on + strand, within Synpcc7942_0725at 719.295 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.346 kb on + strand, within Synpcc7942_0725at 719.357 kb on - strand, within Synpcc7942_0725at 719.357 kb on - strand, within Synpcc7942_0725at 719.359 kb on - strand, within Synpcc7942_0725at 719.395 kb on + strand, within Synpcc7942_0725at 719.420 kb on + strand, within Synpcc7942_0725at 719.436 kb on - strand, within Synpcc7942_0725at 719.437 kb on - strand, within Synpcc7942_0725

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
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717,112 + -2.0
717,167 + -1.0
717,167 + +1.0
717,167 + +0.0
717,175 - +1.0
717,175 - +0.2
717,204 + +0.4
717,204 + +0.0
717,212 - -1.2
717,212 - +0.8
717,233 - +0.0
717,271 + -1.0
717,271 + +0.0
717,284 + +1.0
717,284 + +0.0
717,284 + +0.0
717,287 - -1.3
717,290 + +0.0
717,309 + -0.4
717,317 - +0.4
717,317 - -0.3
717,368 - +0.3
718,094 + Synpcc7942_0724 0.20 +0.7
718,100 - Synpcc7942_0724 0.22 -2.3
718,100 - Synpcc7942_0724 0.22 -1.4
718,102 - Synpcc7942_0724 0.22 +1.0
718,147 + Synpcc7942_0724 0.32 -1.0
718,160 - Synpcc7942_0724 0.35 -0.8
718,161 + Synpcc7942_0724 0.35 +1.0
718,193 + Synpcc7942_0724 0.43 -0.6
718,193 + Synpcc7942_0724 0.43 -2.8
718,193 + Synpcc7942_0724 0.43 -1.8
718,193 + Synpcc7942_0724 0.43 -3.2
718,203 + Synpcc7942_0724 0.45 +1.0
718,218 + Synpcc7942_0724 0.48 -0.5
718,218 + Synpcc7942_0724 0.48 -0.9
718,218 - Synpcc7942_0724 0.48 -0.7
718,238 + Synpcc7942_0724 0.53 -2.1
718,244 - Synpcc7942_0724 0.54 +1.0
718,251 + Synpcc7942_0724 0.56 -2.3
718,251 - Synpcc7942_0724 0.56 -0.9
718,319 - Synpcc7942_0724 0.71 -0.3
718,352 + Synpcc7942_0724 0.78 -1.0
718,352 + Synpcc7942_0724 0.78 -1.7
718,358 - Synpcc7942_0724 0.80 +0.7
718,360 - Synpcc7942_0724 0.80 +0.4
718,365 + Synpcc7942_0724 0.81 -0.7
718,365 + Synpcc7942_0724 0.81 +0.0
718,365 + Synpcc7942_0724 0.81 +1.0
718,365 + Synpcc7942_0724 0.81 -0.6
718,373 - Synpcc7942_0724 0.83 +1.0
718,373 - Synpcc7942_0724 0.83 -0.6
718,373 - Synpcc7942_0724 0.83 -1.0
718,373 - Synpcc7942_0724 0.83 -1.5
718,373 - Synpcc7942_0724 0.83 +0.3
718,384 + Synpcc7942_0724 0.86 -1.9
718,391 + Synpcc7942_0724 0.87 +1.0
718,391 + Synpcc7942_0724 0.87 -1.0
718,396 + Synpcc7942_0724 0.88 -1.0
718,414 - -1.7
718,414 - -0.5
718,414 - -1.4
718,455 + +1.0
718,455 + -2.2
718,455 + -0.6
718,466 + -0.1
718,466 + -0.7
718,473 - +2.0
718,474 + -1.2
718,482 - -1.6
718,482 - +1.7
718,482 - -1.2
718,519 - +1.0
718,521 - -1.0
718,730 - +1.0
718,730 - +0.3
718,781 - +1.0
718,801 + +0.6
718,809 + Synpcc7942_0725 0.10 +0.0
718,809 + Synpcc7942_0725 0.10 -1.2
718,819 + Synpcc7942_0725 0.11 +1.7
718,836 + Synpcc7942_0725 0.12 -1.0
718,838 + Synpcc7942_0725 0.12 -0.9
718,838 + Synpcc7942_0725 0.12 -2.0
718,838 + Synpcc7942_0725 0.12 +0.6
718,846 - Synpcc7942_0725 0.13 -0.6
718,846 - Synpcc7942_0725 0.13 +2.6
718,848 + Synpcc7942_0725 0.13 +0.7
718,855 + Synpcc7942_0725 0.13 -0.9
718,871 - Synpcc7942_0725 0.15 +0.0
718,901 + Synpcc7942_0725 0.17 -2.0
718,915 + Synpcc7942_0725 0.18 +0.4
718,940 + Synpcc7942_0725 0.19 -0.6
718,940 + Synpcc7942_0725 0.19 -0.6
718,950 + Synpcc7942_0725 0.20 -2.3
718,950 + Synpcc7942_0725 0.20 -1.6
718,963 - Synpcc7942_0725 0.21 -1.8
718,970 - Synpcc7942_0725 0.22 +0.7
719,000 + Synpcc7942_0725 0.24 +0.0
719,019 + Synpcc7942_0725 0.25 -0.9
719,027 - Synpcc7942_0725 0.26 -0.6
719,027 - Synpcc7942_0725 0.26 -1.3
719,032 - Synpcc7942_0725 0.26 -1.2
719,033 - Synpcc7942_0725 0.26 +0.4
719,038 + Synpcc7942_0725 0.26 +1.0
719,046 - Synpcc7942_0725 0.27 -1.2
719,061 + Synpcc7942_0725 0.28 -1.9
719,062 + Synpcc7942_0725 0.28 -0.3
719,072 - Synpcc7942_0725 0.29 -1.3
719,083 - Synpcc7942_0725 0.30 -0.3
719,090 + Synpcc7942_0725 0.30 -1.4
719,090 + Synpcc7942_0725 0.30 +1.4
719,090 + Synpcc7942_0725 0.30 -0.8
719,090 + Synpcc7942_0725 0.30 -1.0
719,098 - Synpcc7942_0725 0.31 -0.8
719,102 + Synpcc7942_0725 0.31 -0.3
719,110 + Synpcc7942_0725 0.31 -2.9
719,110 - Synpcc7942_0725 0.31 -1.4
719,110 - Synpcc7942_0725 0.31 +2.4
719,134 - Synpcc7942_0725 0.33 +0.3
719,134 - Synpcc7942_0725 0.33 -0.2
719,164 + Synpcc7942_0725 0.35 -0.6
719,182 - Synpcc7942_0725 0.37 -0.1
719,182 - Synpcc7942_0725 0.37 -1.0
719,188 + Synpcc7942_0725 0.37 +0.4
719,188 + Synpcc7942_0725 0.37 +0.4
719,229 + Synpcc7942_0725 0.40 +1.0
719,247 - Synpcc7942_0725 0.41 +0.0
719,273 + Synpcc7942_0725 0.43 +1.0
719,274 + Synpcc7942_0725 0.43 -1.3
719,280 + Synpcc7942_0725 0.44 +1.0
719,280 + Synpcc7942_0725 0.44 -0.5
719,289 + Synpcc7942_0725 0.44 -1.2
719,295 + Synpcc7942_0725 0.45 -0.3
719,346 + Synpcc7942_0725 0.48 -0.4
719,346 + Synpcc7942_0725 0.48 +0.4
719,346 + Synpcc7942_0725 0.48 -1.3
719,346 + Synpcc7942_0725 0.48 -1.7
719,357 - Synpcc7942_0725 0.49 +0.3
719,357 - Synpcc7942_0725 0.49 +2.0
719,359 - Synpcc7942_0725 0.49 +0.8
719,395 + Synpcc7942_0725 0.52 +1.4
719,420 + Synpcc7942_0725 0.53 +2.0
719,436 - Synpcc7942_0725 0.55 -1.7
719,437 - Synpcc7942_0725 0.55 +1.0

Or see this region's nucleotide sequence