Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psbC and Synpcc7942_0657 are separated by 387 nucleotides Synpcc7942_0657 and Synpcc7942_0658 are separated by 169 nucleotides Synpcc7942_0658 and Synpcc7942_0659 are separated by 83 nucleotides
Synpcc7942_0656: psbC - photosystem II 44 kDa subunit reaction center protein, at 651,274 to 652,659
psbC
Synpcc7942_0657: Synpcc7942_0657 - hypothetical protein, at 653,047 to 653,388
_0657
Synpcc7942_0658: Synpcc7942_0658 - hypothetical protein, at 653,558 to 653,770
_0658
Synpcc7942_0659: Synpcc7942_0659 - Rad3-related DNA helicases-like, at 653,854 to 655,275
_0659
Position (kb) 653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.738 kb on + strand at 652.790 kb on + strand at 652.811 kb on - strand at 652.827 kb on + strand at 652.876 kb on - strand at 652.892 kb on - strand at 652.980 kb on - strand at 652.989 kb on - strand at 652.997 kb on + strand at 653.060 kb on - strand at 653.127 kb on - strand, within Synpcc7942_0657 at 653.362 kb on + strand at 653.404 kb on - strand at 653.520 kb on + strand at 653.520 kb on + strand at 653.523 kb on - strand at 653.542 kb on + strand at 653.557 kb on - strand at 653.579 kb on + strand at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand at 653.589 kb on + strand, within Synpcc7942_0658 at 653.794 kb on + strand at 653.807 kb on + strand at 653.821 kb on + strand at 653.859 kb on - strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.887 kb on - strand at 653.898 kb on + strand at 653.898 kb on + strand at 653.914 kb on + strand at 653.916 kb on - strand at 654.002 kb on - strand, within Synpcc7942_0659 at 654.043 kb on + strand, within Synpcc7942_0659 at 654.129 kb on + strand, within Synpcc7942_0659 at 654.134 kb on + strand, within Synpcc7942_0659 at 654.137 kb on - strand, within Synpcc7942_0659 at 654.147 kb on - strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.195 kb on + strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.212 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.243 kb on + strand, within Synpcc7942_0659 at 654.251 kb on - strand, within Synpcc7942_0659 at 654.315 kb on - strand, within Synpcc7942_0659 at 654.317 kb on - strand, within Synpcc7942_0659 at 654.334 kb on + strand, within Synpcc7942_0659 at 654.336 kb on + strand, within Synpcc7942_0659 at 654.356 kb on + strand, within Synpcc7942_0659 at 654.364 kb on - strand, within Synpcc7942_0659 at 654.369 kb on - strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.415 kb on + strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.478 kb on - strand, within Synpcc7942_0659 at 654.491 kb on + strand, within Synpcc7942_0659 at 654.515 kb on + strand, within Synpcc7942_0659 at 654.534 kb on - strand, within Synpcc7942_0659 at 654.547 kb on - strand, within Synpcc7942_0659 at 654.548 kb on - strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.615 kb on - strand, within Synpcc7942_0659 at 654.615 kb on - strand at 654.626 kb on + strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.639 kb on - strand, within Synpcc7942_0659 at 654.671 kb on - strand, within Synpcc7942_0659 at 654.672 kb on - strand, within Synpcc7942_0659 at 654.687 kb on + strand, within Synpcc7942_0659 at 654.754 kb on - strand, within Synpcc7942_0659 at 654.755 kb on - strand, within Synpcc7942_0659 at 654.762 kb on + strand, within Synpcc7942_0659
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 652,738 + +1.7 652,790 + +2.6 652,811 - -0.8 652,827 + -0.3 652,876 - -1.2 652,892 - +1.1 652,980 - -0.7 652,989 - +1.8 652,997 + -1.6 653,060 - -2.0 653,127 - Synpcc7942_0657 0.23 +1.0 653,362 + +0.4 653,404 - +1.0 653,520 + -0.6 653,520 + -0.0 653,523 - -2.8 653,542 + +1.3 653,557 - +1.0 653,579 + +1.0 653,587 - Synpcc7942_0658 0.14 -0.4 653,587 - Synpcc7942_0658 0.14 -0.8 653,587 - -0.0 653,589 + Synpcc7942_0658 0.15 -0.0 653,794 + +0.1 653,807 + +2.0 653,821 + -2.3 653,859 - +1.7 653,879 + -0.3 653,879 + -0.9 653,879 + -0.3 653,879 + -1.2 653,879 + -1.0 653,887 - +0.6 653,898 + -0.7 653,898 + -1.6 653,914 + -0.6 653,916 - -1.0 654,002 - Synpcc7942_0659 0.10 -0.0 654,043 + Synpcc7942_0659 0.13 -0.5 654,129 + Synpcc7942_0659 0.19 +0.1 654,134 + Synpcc7942_0659 0.20 +0.0 654,137 - Synpcc7942_0659 0.20 -0.5 654,147 - Synpcc7942_0659 0.21 +1.0 654,174 + Synpcc7942_0659 0.23 -0.3 654,174 + Synpcc7942_0659 0.23 +1.0 654,174 + Synpcc7942_0659 0.23 -1.3 654,182 - Synpcc7942_0659 0.23 -0.7 654,182 - Synpcc7942_0659 0.23 +2.1 654,182 - Synpcc7942_0659 0.23 -1.8 654,195 + Synpcc7942_0659 0.24 +0.0 654,203 - Synpcc7942_0659 0.25 +1.6 654,203 - Synpcc7942_0659 0.25 +2.0 654,212 + Synpcc7942_0659 0.25 +0.1 654,222 + Synpcc7942_0659 0.26 +1.0 654,222 + Synpcc7942_0659 0.26 -1.4 654,222 + Synpcc7942_0659 0.26 +1.0 654,243 + Synpcc7942_0659 0.27 -1.0 654,251 - Synpcc7942_0659 0.28 -1.7 654,315 - Synpcc7942_0659 0.32 +0.4 654,317 - Synpcc7942_0659 0.33 -1.5 654,334 + Synpcc7942_0659 0.34 +3.0 654,336 + Synpcc7942_0659 0.34 -0.0 654,356 + Synpcc7942_0659 0.35 -2.3 654,364 - Synpcc7942_0659 0.36 -0.6 654,369 - Synpcc7942_0659 0.36 -1.3 654,410 + Synpcc7942_0659 0.39 -0.6 654,410 + Synpcc7942_0659 0.39 -0.4 654,410 + Synpcc7942_0659 0.39 +0.4 654,410 + Synpcc7942_0659 0.39 -1.2 654,410 + Synpcc7942_0659 0.39 -1.8 654,410 + Synpcc7942_0659 0.39 -0.2 654,410 + Synpcc7942_0659 0.39 +1.0 654,410 + Synpcc7942_0659 0.39 +1.0 654,415 + Synpcc7942_0659 0.39 -1.3 654,418 - Synpcc7942_0659 0.40 -0.0 654,418 - +1.0 654,418 - Synpcc7942_0659 0.40 -0.0 654,418 - Synpcc7942_0659 0.40 +1.3 654,418 - Synpcc7942_0659 0.40 +1.0 654,418 - Synpcc7942_0659 0.40 -0.5 654,418 - Synpcc7942_0659 0.40 -0.4 654,478 - Synpcc7942_0659 0.44 +0.1 654,491 + Synpcc7942_0659 0.45 -0.2 654,515 + Synpcc7942_0659 0.46 +0.6 654,534 - Synpcc7942_0659 0.48 +0.5 654,547 - Synpcc7942_0659 0.49 +1.0 654,548 - Synpcc7942_0659 0.49 -0.0 654,562 + Synpcc7942_0659 0.50 -0.9 654,562 + Synpcc7942_0659 0.50 -1.4 654,615 - Synpcc7942_0659 0.54 -1.2 654,615 - -0.9 654,626 + Synpcc7942_0659 0.54 -0.9 654,634 - Synpcc7942_0659 0.55 -1.0 654,634 - Synpcc7942_0659 0.55 -0.5 654,639 - Synpcc7942_0659 0.55 -2.0 654,671 - Synpcc7942_0659 0.57 -1.6 654,672 - Synpcc7942_0659 0.58 -0.6 654,687 + Synpcc7942_0659 0.59 -0.7 654,754 - Synpcc7942_0659 0.63 +0.4 654,755 - Synpcc7942_0659 0.63 +1.5 654,762 + Synpcc7942_0659 0.64 -0.0
Or see this region's nucleotide sequence