Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltA and sixA are separated by 134 nucleotides sixA and Synpcc7942_0614 are separated by 3 nucleotides
Synpcc7942_0612: gltA - methylcitrate synthase, at 602,209 to 603,369
gltA
Synpcc7942_0613: sixA - phosphohistidine phosphatase, SixA, at 603,504 to 603,992
sixA
Synpcc7942_0614: Synpcc7942_0614 - hypothetical protein, at 603,996 to 605,675
_0614
Position (kb) 603
604 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 603.455 kb on - strand at 603.490 kb on + strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.529 kb on + strand at 603.569 kb on - strand, within sixA at 603.583 kb on - strand, within sixA at 603.603 kb on - strand, within sixA at 603.603 kb on - strand, within sixA at 603.615 kb on + strand, within sixA at 603.615 kb on + strand, within sixA at 603.615 kb on + strand, within sixA at 603.618 kb on - strand, within sixA at 603.623 kb on - strand, within sixA at 603.623 kb on - strand, within sixA at 603.641 kb on + strand, within sixA at 603.661 kb on - strand, within sixA at 603.661 kb on - strand, within sixA at 603.661 kb on - strand, within sixA at 603.687 kb on + strand, within sixA at 603.687 kb on + strand, within sixA at 603.732 kb on + strand, within sixA at 603.780 kb on + strand, within sixA at 603.825 kb on + strand, within sixA at 603.828 kb on - strand, within sixA at 603.838 kb on + strand, within sixA at 603.845 kb on - strand, within sixA at 603.850 kb on + strand, within sixA at 603.905 kb on + strand, within sixA at 603.913 kb on + strand, within sixA at 603.994 kb on + strand at 604.037 kb on - strand at 604.052 kb on - strand at 604.544 kb on - strand, within Synpcc7942_0614 at 604.686 kb on + strand, within Synpcc7942_0614
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 603,455 - -2.3 603,490 + -0.6 603,510 - +3.0 603,510 - +0.6 603,510 - +0.4 603,510 - +1.0 603,529 + +1.0 603,569 - sixA Synpcc7942_0613 0.13 +0.7 603,583 - sixA Synpcc7942_0613 0.16 -1.1 603,603 - sixA Synpcc7942_0613 0.20 +0.2 603,603 - sixA Synpcc7942_0613 0.20 -0.6 603,615 + sixA Synpcc7942_0613 0.23 -1.0 603,615 + sixA Synpcc7942_0613 0.23 -1.9 603,615 + sixA Synpcc7942_0613 0.23 -0.6 603,618 - sixA Synpcc7942_0613 0.23 -1.0 603,623 - sixA Synpcc7942_0613 0.24 +2.0 603,623 - sixA Synpcc7942_0613 0.24 -0.8 603,641 + sixA Synpcc7942_0613 0.28 +0.4 603,661 - sixA Synpcc7942_0613 0.32 -0.7 603,661 - sixA Synpcc7942_0613 0.32 -1.4 603,661 - sixA Synpcc7942_0613 0.32 -2.0 603,687 + sixA Synpcc7942_0613 0.37 -0.9 603,687 + sixA Synpcc7942_0613 0.37 +2.0 603,732 + sixA Synpcc7942_0613 0.47 -0.2 603,780 + sixA Synpcc7942_0613 0.56 -1.6 603,825 + sixA Synpcc7942_0613 0.66 +1.0 603,828 - sixA Synpcc7942_0613 0.66 -0.9 603,838 + sixA Synpcc7942_0613 0.68 -2.2 603,845 - sixA Synpcc7942_0613 0.70 +1.0 603,850 + sixA Synpcc7942_0613 0.71 +1.5 603,905 + sixA Synpcc7942_0613 0.82 -0.8 603,913 + sixA Synpcc7942_0613 0.84 -2.1 603,994 + -1.9 604,037 - -0.8 604,052 - +0.2 604,544 - Synpcc7942_0614 0.33 -0.0 604,686 + Synpcc7942_0614 0.41 -0.3
Or see this region's nucleotide sequence