Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0549 and Synpcc7942_0550 are separated by 8 nucleotides Synpcc7942_0550 and Synpcc7942_0551 are separated by 532 nucleotides Synpcc7942_0551 and nfrC are separated by 125 nucleotides
Synpcc7942_0549: Synpcc7942_0549 - hypothetical protein, at 531,884 to 532,645
_0549
Synpcc7942_0550: Synpcc7942_0550 - hypothetical protein, at 532,654 to 533,037
_0550
Synpcc7942_0551: Synpcc7942_0551 - hypothetical protein, at 533,570 to 533,941
_0551
Synpcc7942_0552: nfrC - UDP-N-acetylglucosamine 2-epimerase, at 534,067 to 535,185
nfrC
Position (kb) 533
534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 532.611 kb on + strand at 532.611 kb on + strand at 532.655 kb on + strand at 532.737 kb on - strand, within Synpcc7942_0550 at 532.742 kb on + strand, within Synpcc7942_0550 at 532.742 kb on - strand, within Synpcc7942_0550 at 532.772 kb on - strand, within Synpcc7942_0550 at 532.792 kb on + strand, within Synpcc7942_0550 at 532.792 kb on + strand, within Synpcc7942_0550 at 532.828 kb on + strand, within Synpcc7942_0550 at 532.933 kb on - strand, within Synpcc7942_0550 at 532.941 kb on + strand, within Synpcc7942_0550 at 532.954 kb on + strand, within Synpcc7942_0550 at 532.954 kb on - strand, within Synpcc7942_0550 at 532.959 kb on + strand, within Synpcc7942_0550 at 532.959 kb on + strand, within Synpcc7942_0550 at 532.962 kb on - strand, within Synpcc7942_0550 at 532.972 kb on - strand, within Synpcc7942_0550 at 533.003 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.039 kb on - strand at 533.039 kb on - strand at 533.071 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.081 kb on + strand at 533.088 kb on + strand at 533.088 kb on + strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.089 kb on - strand at 533.249 kb on + strand at 533.431 kb on + strand at 533.502 kb on + strand at 533.502 kb on + strand at 533.508 kb on - strand at 533.553 kb on + strand at 533.560 kb on + strand at 533.561 kb on - strand at 533.561 kb on - strand at 533.579 kb on + strand at 533.658 kb on - strand, within Synpcc7942_0551 at 533.666 kb on + strand, within Synpcc7942_0551 at 533.751 kb on - strand, within Synpcc7942_0551 at 533.756 kb on - strand, within Synpcc7942_0551 at 533.777 kb on - strand, within Synpcc7942_0551 at 533.815 kb on + strand, within Synpcc7942_0551 at 533.823 kb on - strand, within Synpcc7942_0551 at 533.833 kb on + strand, within Synpcc7942_0551 at 533.846 kb on + strand, within Synpcc7942_0551 at 533.846 kb on + strand, within Synpcc7942_0551 at 533.902 kb on - strand, within Synpcc7942_0551 at 533.915 kb on + strand at 533.923 kb on - strand at 533.937 kb on + strand at 534.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 532,611 + +2.6 532,611 + -0.2 532,655 + -0.9 532,737 - Synpcc7942_0550 0.22 +2.4 532,742 + Synpcc7942_0550 0.23 -1.4 532,742 - Synpcc7942_0550 0.23 -1.4 532,772 - Synpcc7942_0550 0.31 -1.4 532,792 + Synpcc7942_0550 0.36 -0.8 532,792 + Synpcc7942_0550 0.36 -0.0 532,828 + Synpcc7942_0550 0.45 -0.6 532,933 - Synpcc7942_0550 0.73 -0.4 532,941 + Synpcc7942_0550 0.75 -1.0 532,954 + Synpcc7942_0550 0.78 -0.9 532,954 - Synpcc7942_0550 0.78 +0.4 532,959 + Synpcc7942_0550 0.79 +1.0 532,959 + Synpcc7942_0550 0.79 -1.1 532,962 - Synpcc7942_0550 0.80 +1.0 532,972 - Synpcc7942_0550 0.83 -0.0 533,003 + +2.0 533,003 + -1.3 533,003 + +1.0 533,003 + +0.6 533,039 - +1.0 533,039 - -0.0 533,071 + -0.4 533,081 + -0.6 533,081 + -1.2 533,081 + -0.8 533,081 + -0.5 533,081 + -2.6 533,081 + -1.9 533,088 + +1.0 533,088 + -0.7 533,089 - -0.2 533,089 - +1.0 533,089 - -0.8 533,089 - -2.5 533,089 - -0.4 533,249 + -1.4 533,431 + -0.7 533,502 + -1.2 533,502 + +0.1 533,508 - -0.0 533,553 + +0.6 533,560 + -0.8 533,561 - +0.7 533,561 - -1.9 533,579 + -0.0 533,658 - Synpcc7942_0551 0.24 -1.6 533,666 + Synpcc7942_0551 0.26 -1.6 533,751 - Synpcc7942_0551 0.49 -0.4 533,756 - Synpcc7942_0551 0.50 +1.3 533,777 - Synpcc7942_0551 0.56 -0.5 533,815 + Synpcc7942_0551 0.66 +1.0 533,823 - Synpcc7942_0551 0.68 -0.0 533,833 + Synpcc7942_0551 0.71 -1.1 533,846 + Synpcc7942_0551 0.74 -1.0 533,846 + Synpcc7942_0551 0.74 -0.9 533,902 - Synpcc7942_0551 0.89 +0.4 533,915 + +0.4 533,923 - -1.1 533,937 + -0.9 534,061 - -1.3
Or see this region's nucleotide sequence