Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0436 and Synpcc7942_0437 are separated by 312 nucleotides Synpcc7942_0437 and Synpcc7942_0438 overlap by 41 nucleotides Synpcc7942_0438 and chlM are separated by 115 nucleotides chlM and nagA are separated by 45 nucleotides
Synpcc7942_0436: Synpcc7942_0436 - hypothetical protein, at 426,845 to 427,150
_0436
Synpcc7942_0437: Synpcc7942_0437 - putative glutathione peroxidase, at 427,463 to 428,029
_0437
Synpcc7942_0438: Synpcc7942_0438 - hypothetical protein, at 427,989 to 428,495
_0438
Synpcc7942_0439: chlM - Mg-protoporphyrin IX methyl transferase, at 428,611 to 429,300
chlM
Synpcc7942_0440: nagA - N-acetylglucosamine 6-phosphate deacetylase, at 429,346 to 430,473
nagA
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 427.011 kb on - strand, within Synpcc7942_0436 at 427.025 kb on - strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.189 kb on - strand at 427.189 kb on - strand at 427.189 kb on - strand at 427.214 kb on - strand at 427.359 kb on - strand at 427.497 kb on - strand at 427.679 kb on - strand, within Synpcc7942_0437 at 427.729 kb on + strand, within Synpcc7942_0437 at 427.930 kb on - strand, within Synpcc7942_0437 at 427.952 kb on - strand, within Synpcc7942_0437 at 428.014 kb on + strand at 428.097 kb on + strand, within Synpcc7942_0438 at 428.334 kb on - strand, within Synpcc7942_0438 at 428.460 kb on - strand at 429.296 kb on + strand at 429.343 kb on + strand at 429.351 kb on - strand at 429.352 kb on - strand at 429.354 kb on + strand at 429.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 427,011 - Synpcc7942_0436 0.54 -0.2 427,025 - Synpcc7942_0436 0.59 -0.6 427,027 + Synpcc7942_0436 0.59 -2.9 427,027 + Synpcc7942_0436 0.59 -0.9 427,027 + Synpcc7942_0436 0.59 -1.0 427,189 - +2.0 427,189 - +0.0 427,189 - -3.2 427,214 - -2.5 427,359 - +3.6 427,497 - +0.5 427,679 - Synpcc7942_0437 0.38 +1.4 427,729 + Synpcc7942_0437 0.47 -1.8 427,930 - Synpcc7942_0437 0.82 -2.1 427,952 - Synpcc7942_0437 0.86 -1.7 428,014 + +1.0 428,097 + Synpcc7942_0438 0.21 -1.8 428,334 - Synpcc7942_0438 0.68 +0.6 428,460 - +0.4 429,296 + -0.3 429,343 + -2.7 429,351 - -1.2 429,352 - +0.1 429,354 + +0.6 429,362 - -0.5
Or see this region's nucleotide sequence