Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0341 and Synpcc7942_0342 are separated by 157 nucleotides Synpcc7942_0342 and psb27 are separated by 63 nucleotides psb27 and Synpcc7942_0344 are separated by 352 nucleotides
Synpcc7942_0341: Synpcc7942_0341 - hypothetical protein, at 335,633 to 336,205
_0341
Synpcc7942_0342: Synpcc7942_0342 - hypothetical protein, at 336,363 to 336,590
_0342
Synpcc7942_0343: psb27 - photosystem II 11 kD protein, at 336,654 to 337,055
psb27
Synpcc7942_0344: Synpcc7942_0344 - probable peptidase, at 337,408 to 338,451
_0344
Position (kb) 336
337
338 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 335.660 kb on + strand at 335.770 kb on - strand, within Synpcc7942_0341 at 335.809 kb on + strand, within Synpcc7942_0341 at 335.928 kb on + strand, within Synpcc7942_0341 at 335.937 kb on - strand, within Synpcc7942_0341 at 335.961 kb on + strand, within Synpcc7942_0341 at 335.969 kb on - strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.988 kb on - strand, within Synpcc7942_0341 at 336.029 kb on - strand, within Synpcc7942_0341 at 336.032 kb on + strand, within Synpcc7942_0341 at 336.038 kb on + strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.149 kb on - strand at 336.185 kb on + strand at 336.204 kb on + strand at 336.207 kb on - strand at 336.212 kb on + strand at 336.262 kb on + strand at 336.262 kb on + strand at 336.270 kb on - strand at 336.304 kb on + strand at 336.312 kb on - strand at 336.312 kb on - strand at 336.345 kb on + strand at 336.345 kb on + strand at 336.345 kb on + strand at 336.350 kb on + strand at 336.353 kb on - strand at 336.353 kb on - strand at 336.353 kb on - strand at 336.365 kb on + strand at 336.366 kb on + strand at 336.373 kb on - strand at 336.395 kb on + strand, within Synpcc7942_0342 at 336.395 kb on + strand, within Synpcc7942_0342 at 336.395 kb on + strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.403 kb on - strand, within Synpcc7942_0342 at 336.405 kb on + strand, within Synpcc7942_0342 at 336.425 kb on - strand, within Synpcc7942_0342 at 336.452 kb on + strand, within Synpcc7942_0342 at 336.468 kb on + strand, within Synpcc7942_0342 at 336.498 kb on + strand, within Synpcc7942_0342 at 336.504 kb on + strand, within Synpcc7942_0342 at 336.506 kb on - strand, within Synpcc7942_0342 at 336.512 kb on - strand, within Synpcc7942_0342 at 336.544 kb on - strand, within Synpcc7942_0342 at 336.544 kb on - strand, within Synpcc7942_0342 at 336.563 kb on - strand, within Synpcc7942_0342 at 336.590 kb on + strand at 336.640 kb on + strand at 336.769 kb on - strand, within psb27 at 336.774 kb on + strand, within psb27 at 336.774 kb on + strand, within psb27 at 336.814 kb on - strand, within psb27 at 336.838 kb on + strand, within psb27 at 336.933 kb on + strand, within psb27 at 337.050 kb on + strand at 337.050 kb on + strand at 337.050 kb on + strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.101 kb on + strand at 337.107 kb on + strand at 337.200 kb on + strand at 337.200 kb on + strand at 337.200 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.201 kb on + strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.209 kb on - strand at 337.222 kb on - strand at 337.224 kb on + strand at 337.236 kb on + strand at 337.245 kb on - strand at 337.249 kb on + strand at 337.257 kb on + strand at 337.257 kb on + strand at 337.327 kb on + strand at 337.364 kb on + strand at 337.405 kb on + strand at 337.405 kb on + strand at 337.412 kb on + strand at 337.412 kb on + strand at 337.413 kb on - strand at 337.420 kb on - strand at 337.431 kb on + strand at 337.442 kb on + strand at 337.486 kb on + strand at 337.489 kb on + strand at 337.540 kb on + strand, within Synpcc7942_0344 at 337.563 kb on - strand, within Synpcc7942_0344 at 337.593 kb on - strand, within Synpcc7942_0344 at 337.707 kb on + strand, within Synpcc7942_0344 at 337.719 kb on - strand, within Synpcc7942_0344 at 337.814 kb on + strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.846 kb on + strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.880 kb on + strand at 337.951 kb on - strand, within Synpcc7942_0344 at 337.958 kb on + strand, within Synpcc7942_0344 at 337.966 kb on - strand, within Synpcc7942_0344 at 337.980 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.017 kb on - strand, within Synpcc7942_0344 at 338.042 kb on - strand, within Synpcc7942_0344 at 338.046 kb on - strand, within Synpcc7942_0344
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 335,660 + -1.0 335,770 - Synpcc7942_0341 0.24 -0.4 335,809 + Synpcc7942_0341 0.31 -0.6 335,928 + Synpcc7942_0341 0.51 +0.6 335,937 - Synpcc7942_0341 0.53 -1.6 335,961 + Synpcc7942_0341 0.57 -0.0 335,969 - Synpcc7942_0341 0.59 -0.8 335,980 + Synpcc7942_0341 0.61 -1.0 335,980 + Synpcc7942_0341 0.61 -0.3 335,988 - Synpcc7942_0341 0.62 -1.6 336,029 - Synpcc7942_0341 0.69 -1.2 336,032 + Synpcc7942_0341 0.70 -0.5 336,038 + Synpcc7942_0341 0.71 +1.0 336,041 - Synpcc7942_0341 0.71 +0.3 336,041 - Synpcc7942_0341 0.71 -1.2 336,041 - Synpcc7942_0341 0.71 +0.4 336,149 - +0.4 336,185 + -0.4 336,204 + -0.4 336,207 - +0.1 336,212 + -1.0 336,262 + -0.9 336,262 + -0.9 336,270 - +2.4 336,304 + -0.0 336,312 - +2.0 336,312 - -1.0 336,345 + -1.7 336,345 + +0.2 336,345 + -2.5 336,350 + -0.6 336,353 - +2.3 336,353 - -0.8 336,353 - -0.8 336,365 + +1.2 336,366 + -1.0 336,373 - -1.8 336,395 + Synpcc7942_0342 0.14 -2.0 336,395 + Synpcc7942_0342 0.14 -0.9 336,395 + Synpcc7942_0342 0.14 +0.8 336,403 - Synpcc7942_0342 0.18 +0.3 336,403 - Synpcc7942_0342 0.18 +1.0 336,403 - Synpcc7942_0342 0.18 +2.3 336,403 - Synpcc7942_0342 0.18 -0.9 336,405 + Synpcc7942_0342 0.18 -0.5 336,425 - Synpcc7942_0342 0.27 +1.0 336,452 + Synpcc7942_0342 0.39 +1.6 336,468 + Synpcc7942_0342 0.46 -0.5 336,498 + Synpcc7942_0342 0.59 -0.9 336,504 + Synpcc7942_0342 0.62 +1.0 336,506 - Synpcc7942_0342 0.63 +0.8 336,512 - Synpcc7942_0342 0.65 +1.0 336,544 - Synpcc7942_0342 0.79 +2.0 336,544 - Synpcc7942_0342 0.79 +1.0 336,563 - Synpcc7942_0342 0.88 -0.6 336,590 + -1.6 336,640 + +1.0 336,769 - psb27 Synpcc7942_0343 0.29 -0.6 336,774 + psb27 Synpcc7942_0343 0.30 -0.0 336,774 + psb27 Synpcc7942_0343 0.30 -0.6 336,814 - psb27 Synpcc7942_0343 0.40 +1.0 336,838 + psb27 Synpcc7942_0343 0.46 -1.4 336,933 + psb27 Synpcc7942_0343 0.69 -0.8 337,050 + -0.8 337,050 + -0.6 337,050 + -1.4 337,058 - +1.6 337,058 - -0.9 337,058 - -1.7 337,058 - -0.4 337,058 - -0.8 337,101 + -2.2 337,107 + -0.8 337,200 + -0.6 337,200 + -0.5 337,200 + -1.3 337,201 + -0.0 337,201 + -0.6 337,201 + -0.2 337,201 + -0.8 337,201 + -0.5 337,201 + -1.5 337,201 + +1.4 337,201 + -0.7 337,209 - +0.6 337,209 - +1.7 337,209 - -1.4 337,209 - -0.9 337,209 - -2.2 337,222 - +0.1 337,224 + +0.6 337,236 + +0.3 337,245 - -0.6 337,249 + +0.2 337,257 + -0.5 337,257 + -1.0 337,327 + -2.1 337,364 + -1.0 337,405 + +0.4 337,405 + -1.9 337,412 + -2.0 337,412 + +1.0 337,413 - +1.0 337,420 - -0.4 337,431 + +1.4 337,442 + -1.2 337,486 + -0.6 337,489 + -1.3 337,540 + Synpcc7942_0344 0.13 +1.0 337,563 - Synpcc7942_0344 0.15 -1.8 337,593 - Synpcc7942_0344 0.18 +1.0 337,707 + Synpcc7942_0344 0.29 +1.0 337,719 - Synpcc7942_0344 0.30 -1.6 337,814 + Synpcc7942_0344 0.39 -0.4 337,821 - Synpcc7942_0344 0.40 +1.2 337,821 - Synpcc7942_0344 0.40 -1.4 337,846 + Synpcc7942_0344 0.42 -1.4 337,854 - Synpcc7942_0344 0.43 +1.0 337,854 - Synpcc7942_0344 0.43 +1.0 337,870 + Synpcc7942_0344 0.44 -0.9 337,870 + Synpcc7942_0344 0.44 -0.0 337,880 + -1.9 337,951 - Synpcc7942_0344 0.52 -0.6 337,958 + Synpcc7942_0344 0.53 -1.6 337,966 - Synpcc7942_0344 0.53 -0.6 337,980 + Synpcc7942_0344 0.55 +2.0 338,009 + Synpcc7942_0344 0.58 -4.2 338,009 + Synpcc7942_0344 0.58 +1.3 338,017 - Synpcc7942_0344 0.58 +1.0 338,042 - Synpcc7942_0344 0.61 -1.5 338,046 - Synpcc7942_0344 0.61 +2.6
Or see this region's nucleotide sequence