Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0304 and Synpcc7942_0305 are separated by 334 nucleotides Synpcc7942_0305 and chlP overlap by 7 nucleotides chlP and napA are separated by 362 nucleotides
Synpcc7942_0304: Synpcc7942_0304 - hypothetical protein, at 302,833 to 303,480
_0304
Synpcc7942_0305: Synpcc7942_0305 - hypothetical protein, at 303,815 to 304,045
_0305
Synpcc7942_0306: chlP - hypothetical protein, at 304,039 to 304,347
chlP
Synpcc7942_0307: napA - Na+/H+ antiporter, at 304,710 to 305,936
napA
Position (kb) 304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.063 kb on + strand at 303.082 kb on - strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.092 kb on - strand, within Synpcc7942_0304 at 303.092 kb on - strand, within Synpcc7942_0304 at 303.114 kb on + strand, within Synpcc7942_0304 at 303.122 kb on - strand, within Synpcc7942_0304 at 303.129 kb on + strand, within Synpcc7942_0304 at 303.137 kb on - strand, within Synpcc7942_0304 at 303.150 kb on + strand, within Synpcc7942_0304 at 303.150 kb on + strand, within Synpcc7942_0304 at 303.165 kb on + strand, within Synpcc7942_0304 at 303.168 kb on - strand, within Synpcc7942_0304 at 303.257 kb on + strand, within Synpcc7942_0304 at 303.283 kb on + strand, within Synpcc7942_0304 at 303.283 kb on + strand, within Synpcc7942_0304 at 303.291 kb on - strand, within Synpcc7942_0304 at 303.291 kb on - strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.318 kb on - strand, within Synpcc7942_0304 at 303.323 kb on - strand, within Synpcc7942_0304 at 303.323 kb on - strand, within Synpcc7942_0304 at 303.336 kb on - strand, within Synpcc7942_0304 at 303.341 kb on + strand, within Synpcc7942_0304 at 303.382 kb on - strand, within Synpcc7942_0304 at 303.399 kb on + strand, within Synpcc7942_0304 at 303.414 kb on + strand, within Synpcc7942_0304 at 303.414 kb on + strand, within Synpcc7942_0304 at 303.416 kb on + strand at 303.473 kb on - strand at 303.482 kb on - strand at 303.482 kb on - strand at 303.493 kb on - strand at 303.511 kb on + strand at 303.511 kb on + strand at 303.519 kb on - strand at 303.520 kb on + strand at 303.521 kb on + strand at 303.528 kb on - strand at 303.528 kb on - strand at 303.528 kb on - strand at 303.529 kb on - strand at 303.532 kb on + strand at 303.532 kb on + strand at 303.540 kb on - strand at 303.765 kb on + strand at 303.765 kb on + strand at 303.777 kb on + strand at 303.810 kb on + strand at 303.856 kb on + strand, within Synpcc7942_0305 at 303.856 kb on + strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.883 kb on + strand, within Synpcc7942_0305 at 303.924 kb on - strand, within Synpcc7942_0305 at 304.053 kb on + strand at 304.194 kb on - strand, within chlP at 304.227 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.245 kb on - strand, within chlP at 304.245 kb on - strand, within chlP at 304.279 kb on + strand, within chlP at 304.279 kb on + strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.333 kb on + strand at 304.333 kb on - strand at 304.333 kb on - strand at 304.377 kb on + strand at 304.377 kb on + strand at 304.388 kb on + strand at 304.415 kb on - strand at 304.415 kb on - strand at 304.427 kb on + strand at 304.427 kb on + strand at 304.440 kb on + strand at 304.458 kb on + strand at 304.459 kb on + strand at 304.466 kb on - strand at 304.466 kb on - strand at 304.481 kb on + strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.499 kb on - strand at 304.504 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.546 kb on - strand at 304.554 kb on - strand at 304.586 kb on + strand at 304.591 kb on - strand at 304.608 kb on - strand at 304.608 kb on - strand at 304.624 kb on - strand at 304.642 kb on - strand at 304.685 kb on - strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.704 kb on - strand at 304.709 kb on - strand at 304.710 kb on - strand at 304.730 kb on - strand at 304.759 kb on + strand at 304.759 kb on + strand at 304.767 kb on - strand at 304.767 kb on - strand at 304.790 kb on + strand at 304.790 kb on + strand at 304.798 kb on - strand at 304.798 kb on - strand at 304.817 kb on + strand at 304.825 kb on - strand at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.888 kb on - strand, within napA at 304.919 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.966 kb on - strand, within napA at 304.970 kb on - strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.048 kb on - strand, within napA at 305.048 kb on - strand, within napA at 305.065 kb on + strand, within napA at 305.073 kb on - strand, within napA at 305.075 kb on - strand, within napA at 305.078 kb on + strand at 305.085 kb on - strand, within napA at 305.108 kb on - strand, within napA at 305.177 kb on + strand, within napA at 305.199 kb on - strand, within napA at 305.205 kb on + strand, within napA at 305.227 kb on + strand, within napA at 305.247 kb on + strand, within napA at 305.267 kb on - strand, within napA at 305.291 kb on - strand at 305.326 kb on - strand, within napA at 305.328 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.341 kb on - strand, within napA at 305.341 kb on - strand, within napA
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 303,063 + -0.5 303,082 - Synpcc7942_0304 0.38 -0.0 303,084 + Synpcc7942_0304 0.39 +2.0 303,084 + Synpcc7942_0304 0.39 -1.1 303,084 + +0.6 303,084 + Synpcc7942_0304 0.39 -1.9 303,084 + Synpcc7942_0304 0.39 +0.9 303,084 + Synpcc7942_0304 0.39 -1.1 303,092 - Synpcc7942_0304 0.40 -2.5 303,092 - Synpcc7942_0304 0.40 -1.7 303,114 + Synpcc7942_0304 0.43 -2.0 303,122 - Synpcc7942_0304 0.45 -0.5 303,129 + Synpcc7942_0304 0.46 -0.0 303,137 - Synpcc7942_0304 0.47 -0.5 303,150 + Synpcc7942_0304 0.49 -1.0 303,150 + Synpcc7942_0304 0.49 -1.6 303,165 + Synpcc7942_0304 0.51 +1.7 303,168 - Synpcc7942_0304 0.52 -0.6 303,257 + Synpcc7942_0304 0.65 -0.9 303,283 + Synpcc7942_0304 0.69 -0.7 303,283 + Synpcc7942_0304 0.69 +0.8 303,291 - Synpcc7942_0304 0.71 -1.1 303,291 - Synpcc7942_0304 0.71 +0.7 303,315 + Synpcc7942_0304 0.74 -0.4 303,315 + Synpcc7942_0304 0.74 -1.8 303,315 + Synpcc7942_0304 0.74 -0.3 303,315 + Synpcc7942_0304 0.74 -1.5 303,318 - Synpcc7942_0304 0.75 +2.6 303,323 - Synpcc7942_0304 0.76 +0.6 303,323 - Synpcc7942_0304 0.76 -0.8 303,336 - Synpcc7942_0304 0.78 +1.0 303,341 + Synpcc7942_0304 0.78 -1.1 303,382 - Synpcc7942_0304 0.85 -0.3 303,399 + Synpcc7942_0304 0.87 -0.3 303,414 + Synpcc7942_0304 0.90 -0.6 303,414 + Synpcc7942_0304 0.90 -0.7 303,416 + +2.3 303,473 - +0.6 303,482 - -0.7 303,482 - -0.0 303,493 - -0.9 303,511 + +1.0 303,511 + +0.4 303,519 - -2.4 303,520 + +0.2 303,521 + +2.0 303,528 - +1.7 303,528 - +2.0 303,528 - -0.5 303,529 - -1.0 303,532 + -1.0 303,532 + -0.6 303,540 - -0.0 303,765 + -0.9 303,765 + -0.6 303,777 + +1.0 303,810 + -1.9 303,856 + Synpcc7942_0305 0.18 -0.4 303,856 + Synpcc7942_0305 0.18 -1.6 303,864 - Synpcc7942_0305 0.21 -1.9 303,864 - Synpcc7942_0305 0.21 -1.6 303,883 + Synpcc7942_0305 0.29 -1.7 303,924 - Synpcc7942_0305 0.47 +1.0 304,053 + -0.0 304,194 - chlP Synpcc7942_0306 0.50 +1.0 304,227 + chlP Synpcc7942_0306 0.61 +2.0 304,237 + chlP Synpcc7942_0306 0.64 +0.2 304,237 + chlP Synpcc7942_0306 0.64 +0.1 304,245 - chlP Synpcc7942_0306 0.67 -0.3 304,245 - chlP Synpcc7942_0306 0.67 -0.2 304,279 + chlP Synpcc7942_0306 0.78 -0.0 304,279 + chlP Synpcc7942_0306 0.78 +0.4 304,287 - chlP Synpcc7942_0306 0.80 -0.6 304,287 - chlP Synpcc7942_0306 0.80 -1.4 304,287 - chlP Synpcc7942_0306 0.80 +1.0 304,325 + +0.8 304,325 + +1.0 304,325 + -1.6 304,325 + +0.4 304,325 + -0.2 304,325 + -0.5 304,325 + -1.8 304,325 + -0.8 304,333 + -0.9 304,333 - -0.6 304,333 - -1.3 304,377 + +1.0 304,377 + +1.3 304,388 + -0.0 304,415 - -1.3 304,415 - +0.2 304,427 + -1.0 304,427 + +0.2 304,440 + -0.1 304,458 + -0.0 304,459 + -1.6 304,466 - -0.5 304,466 - -1.3 304,481 + -0.9 304,489 - +1.8 304,489 - +1.3 304,489 - -1.4 304,499 - +1.0 304,504 + +1.4 304,531 + -1.3 304,531 + -0.0 304,531 + -0.3 304,546 - -0.3 304,554 - -2.0 304,586 + -1.5 304,591 - -0.0 304,608 - +1.2 304,608 - -0.0 304,624 - +1.0 304,642 - +1.5 304,685 - -1.0 304,686 + -0.7 304,686 + -1.6 304,686 + -1.3 304,686 + -1.1 304,694 - -1.8 304,694 - +0.0 304,694 - -0.5 304,694 - -1.7 304,694 - -1.2 304,704 - -0.3 304,709 - -1.3 304,710 - -1.2 304,730 - +0.6 304,759 + -0.2 304,759 + +1.1 304,767 - -0.3 304,767 - +0.4 304,790 + -1.7 304,790 + -1.0 304,798 - -1.4 304,798 - -0.8 304,817 + +1.2 304,825 - -1.3 304,875 + napA Synpcc7942_0307 0.13 +1.0 304,875 + napA Synpcc7942_0307 0.13 +0.2 304,875 + napA Synpcc7942_0307 0.13 -0.5 304,888 - napA Synpcc7942_0307 0.15 -0.2 304,919 + napA Synpcc7942_0307 0.17 -1.9 304,947 + napA Synpcc7942_0307 0.19 -1.2 304,947 + napA Synpcc7942_0307 0.19 -0.6 304,955 - napA Synpcc7942_0307 0.20 -0.9 304,955 - napA Synpcc7942_0307 0.20 -1.4 304,955 - napA Synpcc7942_0307 0.20 +0.4 304,955 - napA Synpcc7942_0307 0.20 +1.0 304,955 - napA Synpcc7942_0307 0.20 -0.6 304,955 - napA Synpcc7942_0307 0.20 -0.6 304,966 - napA Synpcc7942_0307 0.21 -1.8 304,970 - napA Synpcc7942_0307 0.21 -0.6 305,040 + napA Synpcc7942_0307 0.27 +0.1 305,040 + napA Synpcc7942_0307 0.27 +0.6 305,040 + napA Synpcc7942_0307 0.27 -0.6 305,048 - napA Synpcc7942_0307 0.28 -0.0 305,048 - napA Synpcc7942_0307 0.28 -1.4 305,065 + napA Synpcc7942_0307 0.29 +0.5 305,073 - napA Synpcc7942_0307 0.30 -1.3 305,075 - napA Synpcc7942_0307 0.30 -0.0 305,078 + -0.9 305,085 - napA Synpcc7942_0307 0.31 -1.4 305,108 - napA Synpcc7942_0307 0.32 -0.5 305,177 + napA Synpcc7942_0307 0.38 +0.4 305,199 - napA Synpcc7942_0307 0.40 -1.1 305,205 + napA Synpcc7942_0307 0.40 +1.1 305,227 + napA Synpcc7942_0307 0.42 +2.0 305,247 + napA Synpcc7942_0307 0.44 -0.5 305,267 - napA Synpcc7942_0307 0.45 -0.8 305,291 - -1.6 305,326 - napA Synpcc7942_0307 0.50 -1.2 305,328 + napA Synpcc7942_0307 0.50 -0.9 305,333 + napA Synpcc7942_0307 0.51 -1.7 305,333 + napA Synpcc7942_0307 0.51 -0.9 305,341 - napA Synpcc7942_0307 0.51 -0.6 305,341 - napA Synpcc7942_0307 0.51 -1.6
Or see this region's nucleotide sequence