Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmK3 and ccmK4 are separated by 44 nucleotides ccmK4 and Synpcc7942_0286 are separated by 84 nucleotides Synpcc7942_0286 and Synpcc7942_0287 are separated by 54 nucleotides Synpcc7942_0287 and glmU are separated by 11 nucleotides
Synpcc7942_0284: ccmK3 - carbon dioxide concentrating mechanism protein CcmK, at 280,701 to 281,009
ccmK3
Synpcc7942_0285: ccmK4 - carbon dioxide concentrating mechanism protein CcmK, at 281,054 to 281,395
ccmK4
Synpcc7942_0286: Synpcc7942_0286 - hypothetical protein, at 281,480 to 281,842
_0286
Synpcc7942_0287: Synpcc7942_0287 - hypothetical protein, at 281,897 to 282,592
_0287
Synpcc7942_0288: glmU - glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase, at 282,604 to 283,962
glmU
Position (kb) 281
282
283 Strain fitness (log2 ratio) -1
0
1
2 at 280.968 kb on - strand, within ccmK3 at 281.396 kb on + strand at 281.396 kb on + strand at 281.449 kb on + strand at 281.506 kb on + strand at 281.567 kb on + strand, within Synpcc7942_0286 at 281.567 kb on + strand, within Synpcc7942_0286 at 281.630 kb on - strand, within Synpcc7942_0286 at 281.633 kb on + strand, within Synpcc7942_0286 at 281.646 kb on - strand, within Synpcc7942_0286 at 281.725 kb on + strand, within Synpcc7942_0286 at 281.785 kb on - strand, within Synpcc7942_0286 at 281.818 kb on - strand at 281.861 kb on - strand at 281.872 kb on + strand at 281.887 kb on - strand at 281.894 kb on + strand at 281.894 kb on + strand at 281.908 kb on + strand at 281.908 kb on - strand at 281.909 kb on - strand at 281.916 kb on - strand at 281.919 kb on + strand at 281.955 kb on - strand at 281.965 kb on - strand at 281.968 kb on + strand, within Synpcc7942_0287 at 282.012 kb on + strand, within Synpcc7942_0287 at 282.020 kb on - strand, within Synpcc7942_0287 at 282.340 kb on - strand, within Synpcc7942_0287 at 282.454 kb on + strand, within Synpcc7942_0287 at 282.610 kb on - strand at 282.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 280,968 - ccmK3 Synpcc7942_0284 0.86 +2.0 281,396 + -1.6 281,396 + +1.8 281,449 + -0.3 281,506 + -0.4 281,567 + Synpcc7942_0286 0.24 -1.5 281,567 + Synpcc7942_0286 0.24 -0.7 281,630 - Synpcc7942_0286 0.41 +0.2 281,633 + Synpcc7942_0286 0.42 -0.8 281,646 - Synpcc7942_0286 0.46 -0.9 281,725 + Synpcc7942_0286 0.67 -0.6 281,785 - Synpcc7942_0286 0.84 -1.1 281,818 - +0.9 281,861 - -0.8 281,872 + -0.7 281,887 - +0.4 281,894 + +1.6 281,894 + -0.4 281,908 + +1.6 281,908 - -1.4 281,909 - -1.3 281,916 - -0.0 281,919 + -0.8 281,955 - -1.3 281,965 - -1.6 281,968 + Synpcc7942_0287 0.10 -1.6 282,012 + Synpcc7942_0287 0.17 -1.1 282,020 - Synpcc7942_0287 0.18 +0.7 282,340 - Synpcc7942_0287 0.64 +0.1 282,454 + Synpcc7942_0287 0.80 +0.4 282,610 - -0.0 282,621 - -0.9
Or see this region's nucleotide sequence