Experiment: Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0053 and Synpcc7942_0054 are separated by 70 nucleotides Synpcc7942_0054 and Synpcc7942_0055 are separated by 32 nucleotides Synpcc7942_0055 and rfbE are separated by 34 nucleotides
Synpcc7942_0053: Synpcc7942_0053 - hypothetical protein, at 55,204 to 56,352
_0053
Synpcc7942_0054: Synpcc7942_0054 - hypothetical protein, at 56,423 to 57,190
_0054
Synpcc7942_0055: Synpcc7942_0055 - hypothetical protein, at 57,223 to 57,906
_0055
Synpcc7942_0056: rfbE - perosamine synthetase, at 57,941 to 59,068
rfbE
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.656 kb on + strand, within Synpcc7942_0053 at 55.664 kb on - strand, within Synpcc7942_0053 at 55.678 kb on + strand, within Synpcc7942_0053 at 55.700 kb on - strand, within Synpcc7942_0053 at 55.731 kb on + strand, within Synpcc7942_0053 at 55.858 kb on + strand, within Synpcc7942_0053 at 56.006 kb on - strand, within Synpcc7942_0053 at 56.115 kb on + strand at 56.134 kb on - strand, within Synpcc7942_0053 at 56.256 kb on + strand at 56.268 kb on + strand at 56.294 kb on - strand at 56.302 kb on - strand at 56.556 kb on + strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.683 kb on - strand, within Synpcc7942_0054 at 56.694 kb on - strand, within Synpcc7942_0054 at 56.809 kb on - strand, within Synpcc7942_0054 at 56.881 kb on + strand, within Synpcc7942_0054 at 56.953 kb on + strand, within Synpcc7942_0054 at 56.961 kb on - strand, within Synpcc7942_0054 at 57.014 kb on + strand, within Synpcc7942_0054 at 57.014 kb on - strand, within Synpcc7942_0054 at 57.022 kb on - strand, within Synpcc7942_0054 at 57.147 kb on + strand at 57.278 kb on + strand at 57.329 kb on - strand, within Synpcc7942_0055 at 57.386 kb on + strand, within Synpcc7942_0055 at 57.483 kb on - strand, within Synpcc7942_0055 at 57.528 kb on - strand, within Synpcc7942_0055 at 57.687 kb on - strand, within Synpcc7942_0055 at 58.021 kb on + strand at 58.064 kb on + strand, within rfbE at 58.067 kb on - strand, within rfbE at 58.071 kb on + strand, within rfbE
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in WT Conditioned Media in Test Tubes with Spin rep 1 remove 55,656 + Synpcc7942_0053 0.39 -1.0 55,664 - Synpcc7942_0053 0.40 +1.0 55,678 + Synpcc7942_0053 0.41 +0.8 55,700 - Synpcc7942_0053 0.43 -1.0 55,731 + Synpcc7942_0053 0.46 -1.1 55,858 + Synpcc7942_0053 0.57 +1.0 56,006 - Synpcc7942_0053 0.70 -0.0 56,115 + -0.8 56,134 - Synpcc7942_0053 0.81 -0.5 56,256 + -1.7 56,268 + -1.7 56,294 - -0.3 56,302 - -0.3 56,556 + Synpcc7942_0054 0.17 -1.6 56,564 - Synpcc7942_0054 0.18 -0.0 56,564 - Synpcc7942_0054 0.18 -1.5 56,683 - Synpcc7942_0054 0.34 -1.2 56,694 - Synpcc7942_0054 0.35 -1.0 56,809 - Synpcc7942_0054 0.50 +2.6 56,881 + Synpcc7942_0054 0.60 +1.6 56,953 + Synpcc7942_0054 0.69 -1.0 56,961 - Synpcc7942_0054 0.70 +0.8 57,014 + Synpcc7942_0054 0.77 -1.4 57,014 - Synpcc7942_0054 0.77 -1.0 57,022 - Synpcc7942_0054 0.78 +1.6 57,147 + -0.9 57,278 + +2.0 57,329 - Synpcc7942_0055 0.15 -0.6 57,386 + Synpcc7942_0055 0.24 +1.5 57,483 - Synpcc7942_0055 0.38 -0.6 57,528 - Synpcc7942_0055 0.45 +1.0 57,687 - Synpcc7942_0055 0.68 +0.4 58,021 + -2.8 58,064 + rfbE Synpcc7942_0056 0.11 -0.6 58,067 - rfbE Synpcc7942_0056 0.11 -1.0 58,071 + rfbE Synpcc7942_0056 0.12 +0.2
Or see this region's nucleotide sequence