Experiment: H2 McCas with 40 minute oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04925 and MMP_RS04930 are separated by 10 nucleotides MMP_RS04930 and MMP_RS04935 are separated by 92 nucleotides MMP_RS04935 and MMP_RS04940 are separated by 142 nucleotides
MMP_RS04925: MMP_RS04925 - DUF530 family protein, at 937,787 to 939,217
_RS04925
MMP_RS04930: MMP_RS04930 - adenosylcobinamide-phosphate synthase CbiB, at 939,228 to 940,148
_RS04930
MMP_RS04935: MMP_RS04935 - translation initiation factor IF-5A, at 940,241 to 940,636
_RS04935
MMP_RS04940: MMP_RS04940 - precorrin-3B C(17)-methyltransferase, at 940,779 to 941,531
_RS04940
Position (kb) 939
940
941 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 938.484 kb on - strand at 938.485 kb on + strand at 938.485 kb on + strand at 938.561 kb on + strand at 938.561 kb on + strand at 938.631 kb on - strand at 938.632 kb on + strand at 938.701 kb on - strand at 938.768 kb on + strand at 938.809 kb on + strand at 938.816 kb on - strand at 938.817 kb on + strand at 938.819 kb on - strand at 938.913 kb on - strand at 939.018 kb on + strand at 939.026 kb on - strand at 939.026 kb on - strand at 939.042 kb on - strand at 939.123 kb on - strand at 939.130 kb on - strand at 939.139 kb on - strand at 939.164 kb on + strand at 939.311 kb on + strand at 939.406 kb on - strand at 939.413 kb on + strand at 939.461 kb on + strand at 939.579 kb on + strand at 939.692 kb on - strand at 939.721 kb on + strand at 939.814 kb on + strand at 939.846 kb on + strand at 939.892 kb on - strand at 940.128 kb on - strand at 940.129 kb on + strand at 940.131 kb on + strand at 940.135 kb on - strand at 940.146 kb on - strand at 940.147 kb on + strand at 940.185 kb on + strand at 940.214 kb on + strand at 940.214 kb on + strand at 940.229 kb on - strand at 940.229 kb on - strand at 940.296 kb on + strand at 940.587 kb on - strand at 940.600 kb on - strand at 940.671 kb on - strand at 940.676 kb on + strand at 940.695 kb on + strand at 940.696 kb on - strand at 940.697 kb on + strand at 940.698 kb on - strand at 940.698 kb on - strand at 940.698 kb on - strand at 940.698 kb on - strand at 940.699 kb on + strand at 940.704 kb on + strand at 940.704 kb on + strand at 940.737 kb on + strand at 940.737 kb on + strand at 940.742 kb on - strand at 940.746 kb on + strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.747 kb on - strand at 940.748 kb on + strand at 940.748 kb on + strand at 940.748 kb on + strand at 940.748 kb on + strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.749 kb on - strand at 940.750 kb on + strand at 940.750 kb on + strand at 940.751 kb on - strand at 940.751 kb on - strand at 940.751 kb on - strand at 940.752 kb on + strand at 940.752 kb on + strand at 940.752 kb on + strand at 940.754 kb on + strand at 940.762 kb on + strand at 940.769 kb on - strand at 940.787 kb on + strand at 940.796 kb on - strand at 940.796 kb on - strand at 940.797 kb on + strand at 940.797 kb on + strand at 940.797 kb on + strand at 940.797 kb on + strand at 940.798 kb on - strand at 940.798 kb on - strand at 940.820 kb on - strand at 940.839 kb on + strand at 940.865 kb on - strand at 940.886 kb on - strand at 940.897 kb on + strand at 940.901 kb on - strand at 941.003 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 40 minute oxygen exposure remove 938,484 - -3.0 938,485 + -2.2 938,485 + -2.3 938,561 + -3.8 938,561 + -3.1 938,631 - -1.6 938,632 + -1.5 938,701 - -1.6 938,768 + -2.5 938,809 + -3.5 938,816 - -2.2 938,817 + -3.4 938,819 - -2.6 938,913 - -3.8 939,018 + -2.3 939,026 - -3.1 939,026 - -2.9 939,042 - -2.1 939,123 - -4.0 939,130 - -3.2 939,139 - -3.3 939,164 + -3.5 939,311 + -2.0 939,406 - -3.4 939,413 + -3.3 939,461 + -2.9 939,579 + -2.5 939,692 - -2.8 939,721 + -1.5 939,814 + -1.5 939,846 + -3.1 939,892 - -3.0 940,128 - -1.0 940,129 + -0.4 940,131 + -1.4 940,135 - -2.2 940,146 - -0.6 940,147 + -1.4 940,185 + +0.6 940,214 + -0.6 940,214 + +0.5 940,229 - -2.4 940,229 - +0.3 940,296 + -3.0 940,587 - -2.9 940,600 - -4.1 940,671 - -3.2 940,676 + -3.3 940,695 + -1.7 940,696 - -3.9 940,697 + -3.0 940,698 - -1.4 940,698 - -2.4 940,698 - -2.2 940,698 - -3.5 940,699 + -2.3 940,704 + -1.5 940,704 + -1.4 940,737 + -2.1 940,737 + -4.0 940,742 - -1.9 940,746 + -3.0 940,747 - -2.3 940,747 - -2.3 940,747 - -1.9 940,747 - -2.4 940,747 - -2.2 940,748 + -1.8 940,748 + -1.8 940,748 + -2.3 940,748 + -1.7 940,749 - -1.5 940,749 - -1.6 940,749 - -1.2 940,749 - -1.0 940,749 - -1.0 940,749 - -1.5 940,750 + -2.6 940,750 + -4.7 940,751 - -0.9 940,751 - -0.2 940,751 - +0.3 940,752 + +0.3 940,752 + -0.4 940,752 + -3.1 940,754 + -0.2 940,762 + -0.3 940,769 - +0.5 940,787 + -0.3 940,796 - +0.3 940,796 - -1.6 940,797 + -0.2 940,797 + -0.9 940,797 + -0.1 940,797 + -0.4 940,798 - -2.5 940,798 - -2.7 940,820 - -2.4 940,839 + -2.9 940,865 - -1.7 940,886 - -1.7 940,897 + -3.6 940,901 - -2.6 941,003 + -2.1
Or see this region's nucleotide sequence