Experiment: H2 McCas with 40 minute oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04845 and MMP_RS04850 are separated by 275 nucleotides MMP_RS04850 and MMP_RS04855 are separated by 5 nucleotides MMP_RS04855 and MMP_RS04860 are separated by 16 nucleotides
MMP_RS04845: MMP_RS04845 - CheF family chemotaxis protein, at 922,112 to 923,158
_RS04845
MMP_RS04850: MMP_RS04850 - UPF0254 family protein, at 923,434 to 923,931
_RS04850
MMP_RS04855: MMP_RS04855 - shikimate dehydrogenase, at 923,937 to 924,773
_RS04855
MMP_RS04860: MMP_RS04860 - coenzyme F420-0:L-glutamate ligase, at 924,790 to 925,536
_RS04860
Position (kb) 923
924 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 922.469 kb on - strand, within MMP_RS04845 at 922.570 kb on - strand, within MMP_RS04845 at 922.601 kb on + strand, within MMP_RS04845 at 922.637 kb on - strand, within MMP_RS04845 at 922.806 kb on + strand, within MMP_RS04845 at 922.869 kb on + strand, within MMP_RS04845 at 922.915 kb on + strand, within MMP_RS04845 at 922.988 kb on - strand, within MMP_RS04845 at 923.098 kb on - strand at 923.099 kb on + strand at 923.206 kb on + strand at 923.217 kb on - strand at 923.217 kb on - strand at 923.217 kb on - strand at 923.220 kb on - strand at 923.221 kb on + strand at 923.232 kb on - strand at 923.233 kb on + strand at 923.249 kb on + strand at 923.262 kb on - strand at 923.263 kb on + strand at 923.267 kb on + strand at 923.268 kb on - strand at 923.298 kb on - strand at 923.299 kb on + strand at 923.310 kb on + strand at 923.313 kb on - strand at 923.328 kb on - strand at 923.333 kb on - strand at 923.339 kb on - strand at 923.348 kb on + strand at 923.357 kb on - strand at 923.357 kb on - strand at 923.357 kb on - strand at 923.361 kb on - strand at 923.376 kb on - strand at 923.379 kb on - strand at 923.379 kb on - strand at 923.379 kb on - strand at 923.382 kb on + strand at 923.392 kb on - strand at 923.397 kb on + strand at 923.415 kb on + strand at 923.422 kb on + strand at 923.536 kb on - strand, within MMP_RS04850 at 923.536 kb on - strand, within MMP_RS04850 at 923.537 kb on + strand, within MMP_RS04850 at 923.541 kb on - strand, within MMP_RS04850 at 923.542 kb on + strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.564 kb on - strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.612 kb on - strand, within MMP_RS04850 at 923.663 kb on + strand, within MMP_RS04850 at 923.664 kb on - strand, within MMP_RS04850 at 923.665 kb on + strand, within MMP_RS04850 at 923.681 kb on - strand, within MMP_RS04850 at 923.696 kb on - strand, within MMP_RS04850 at 923.733 kb on - strand, within MMP_RS04850 at 923.779 kb on + strand, within MMP_RS04850 at 923.784 kb on + strand, within MMP_RS04850 at 923.791 kb on - strand, within MMP_RS04850 at 923.791 kb on - strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.817 kb on - strand, within MMP_RS04850 at 923.818 kb on + strand, within MMP_RS04850 at 923.822 kb on + strand, within MMP_RS04850 at 923.832 kb on + strand, within MMP_RS04850 at 923.849 kb on - strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.885 kb on + strand at 923.885 kb on + strand at 923.885 kb on + strand at 923.887 kb on + strand at 923.887 kb on + strand at 923.887 kb on + strand at 923.889 kb on - strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.960 kb on + strand at 924.032 kb on - strand at 924.091 kb on - strand at 924.238 kb on - strand at 924.243 kb on - strand at 924.243 kb on - strand at 924.246 kb on + strand at 924.435 kb on + strand at 924.502 kb on - strand at 924.503 kb on + strand at 924.513 kb on + strand at 924.558 kb on + strand at 924.683 kb on + strand at 924.725 kb on + strand at 924.756 kb on + strand at 924.819 kb on + strand at 924.876 kb on - strand at 924.908 kb on - strand at 924.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 40 minute oxygen exposure remove 922,469 - MMP_RS04845 0.34 -0.4 922,570 - MMP_RS04845 0.44 +0.1 922,601 + MMP_RS04845 0.47 -0.2 922,637 - MMP_RS04845 0.50 +0.4 922,806 + MMP_RS04845 0.66 -2.6 922,869 + MMP_RS04845 0.72 +0.0 922,915 + MMP_RS04845 0.77 -0.4 922,988 - MMP_RS04845 0.84 -0.2 923,098 - +0.1 923,099 + +0.3 923,206 + -0.1 923,217 - +0.1 923,217 - -0.2 923,217 - +0.7 923,220 - -1.2 923,221 + -0.2 923,232 - +1.4 923,233 + +0.8 923,249 + +0.3 923,262 - +0.2 923,263 + +0.0 923,267 + -0.8 923,268 - +0.2 923,298 - -0.4 923,299 + +0.7 923,310 + +0.3 923,313 - +0.2 923,328 - -1.2 923,333 - -0.4 923,339 - -2.5 923,348 + +0.2 923,357 - -0.0 923,357 - +0.5 923,357 - +0.6 923,361 - -0.1 923,376 - -0.1 923,379 - +0.4 923,379 - -0.5 923,379 - +0.4 923,382 + -1.0 923,392 - -0.8 923,397 + +0.2 923,415 + -1.3 923,422 + -1.6 923,536 - MMP_RS04850 0.20 -2.3 923,536 - MMP_RS04850 0.20 -1.1 923,537 + MMP_RS04850 0.21 -3.3 923,541 - MMP_RS04850 0.21 -1.3 923,542 + MMP_RS04850 0.22 -2.7 923,558 - MMP_RS04850 0.25 -2.3 923,558 - MMP_RS04850 0.25 -3.3 923,558 - MMP_RS04850 0.25 -1.9 923,558 - MMP_RS04850 0.25 -3.9 923,559 + MMP_RS04850 0.25 -2.9 923,559 + MMP_RS04850 0.25 -2.7 923,559 + MMP_RS04850 0.25 -3.3 923,559 + MMP_RS04850 0.25 -1.8 923,559 + MMP_RS04850 0.25 -0.6 923,559 + MMP_RS04850 0.25 -3.2 923,559 + MMP_RS04850 0.25 -2.4 923,559 + MMP_RS04850 0.25 -1.8 923,559 + MMP_RS04850 0.25 -2.8 923,560 - MMP_RS04850 0.25 -3.0 923,560 - MMP_RS04850 0.25 -3.6 923,560 - MMP_RS04850 0.25 -4.4 923,560 - MMP_RS04850 0.25 -2.9 923,560 - MMP_RS04850 0.25 -2.5 923,561 + MMP_RS04850 0.26 -5.4 923,561 + MMP_RS04850 0.26 -2.2 923,561 + MMP_RS04850 0.26 -1.9 923,564 - MMP_RS04850 0.26 -1.5 923,565 + MMP_RS04850 0.26 -2.6 923,565 + MMP_RS04850 0.26 -2.1 923,565 + MMP_RS04850 0.26 -2.3 923,565 + MMP_RS04850 0.26 -1.3 923,565 + MMP_RS04850 0.26 -4.2 923,565 + MMP_RS04850 0.26 -2.5 923,565 + MMP_RS04850 0.26 -1.0 923,612 - MMP_RS04850 0.36 -3.3 923,663 + MMP_RS04850 0.46 -2.0 923,664 - MMP_RS04850 0.46 -3.3 923,665 + MMP_RS04850 0.46 -2.5 923,681 - MMP_RS04850 0.50 -3.9 923,696 - MMP_RS04850 0.53 -4.5 923,733 - MMP_RS04850 0.60 -2.2 923,779 + MMP_RS04850 0.69 -1.7 923,784 + MMP_RS04850 0.70 -2.7 923,791 - MMP_RS04850 0.72 -2.9 923,791 - MMP_RS04850 0.72 -2.1 923,801 + MMP_RS04850 0.74 -2.2 923,801 + MMP_RS04850 0.74 -3.5 923,801 + MMP_RS04850 0.74 -1.4 923,817 - MMP_RS04850 0.77 -3.6 923,818 + MMP_RS04850 0.77 -2.8 923,822 + MMP_RS04850 0.78 -3.6 923,832 + MMP_RS04850 0.80 -1.3 923,849 - MMP_RS04850 0.83 -0.5 923,850 + MMP_RS04850 0.84 -2.2 923,850 + MMP_RS04850 0.84 -3.1 923,850 + MMP_RS04850 0.84 -3.2 923,885 + -3.1 923,885 + -2.5 923,885 + -3.8 923,887 + -4.0 923,887 + -1.9 923,887 + -1.5 923,889 - +0.0 923,890 + -3.2 923,890 + -3.6 923,890 + -4.8 923,890 + -2.8 923,960 + -2.3 924,032 - -2.3 924,091 - -3.2 924,238 - -4.4 924,243 - -2.6 924,243 - -2.6 924,246 + -2.7 924,435 + -2.3 924,502 - -2.3 924,503 + -2.4 924,513 + -3.7 924,558 + -1.3 924,683 + -3.2 924,725 + -2.0 924,756 + -0.2 924,819 + -3.3 924,876 - -3.5 924,908 - -1.5 924,911 - -1.8
Or see this region's nucleotide sequence