Experiment: H2 McCas with 40 minute oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04825 and MMP_RS04830 are separated by 70 nucleotides MMP_RS04830 and MMP_RS04835 are separated by 20 nucleotides MMP_RS04835 and MMP_RS04840 are separated by 15 nucleotides MMP_RS04840 and MMP_RS04845 are separated by 84 nucleotides
MMP_RS04825: MMP_RS04825 - protein-glutamate O-methyltransferase CheR, at 919,439 to 920,251
_RS04825
MMP_RS04830: MMP_RS04830 - chemotaxis protein CheC, at 920,322 to 920,930
_RS04830
MMP_RS04835: MMP_RS04835 - chemotaxis protein CheC, at 920,951 to 921,640
_RS04835
MMP_RS04840: MMP_RS04840 - response regulator, at 921,656 to 922,027
_RS04840
MMP_RS04845: MMP_RS04845 - CheF family chemotaxis protein, at 922,112 to 923,158
_RS04845
Position (kb) 920
921
922 Strain fitness (log2 ratio) -2
-1
0
1 at 919.972 kb on - strand, within MMP_RS04825 at 919.980 kb on + strand, within MMP_RS04825 at 920.014 kb on + strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.048 kb on - strand, within MMP_RS04825 at 920.054 kb on + strand, within MMP_RS04825 at 920.060 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.101 kb on + strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.109 kb on - strand, within MMP_RS04825 at 920.162 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.169 kb on - strand, within MMP_RS04825 at 920.170 kb on + strand at 920.170 kb on + strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.173 kb on - strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.174 kb on + strand at 920.196 kb on + strand at 920.201 kb on - strand at 920.225 kb on + strand at 920.238 kb on - strand at 920.238 kb on - strand at 920.242 kb on - strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.243 kb on + strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.266 kb on - strand at 920.267 kb on + strand at 920.267 kb on + strand at 920.294 kb on + strand at 920.316 kb on - strand at 920.319 kb on - strand at 920.319 kb on - strand at 920.323 kb on - strand at 920.358 kb on - strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.359 kb on + strand at 920.402 kb on - strand, within MMP_RS04830 at 920.402 kb on - strand, within MMP_RS04830 at 920.403 kb on + strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.406 kb on - strand, within MMP_RS04830 at 920.407 kb on + strand, within MMP_RS04830 at 920.411 kb on - strand, within MMP_RS04830 at 920.429 kb on - strand, within MMP_RS04830 at 920.430 kb on + strand, within MMP_RS04830 at 920.444 kb on - strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.478 kb on + strand, within MMP_RS04830 at 920.480 kb on - strand, within MMP_RS04830 at 920.480 kb on - strand, within MMP_RS04830 at 920.514 kb on - strand, within MMP_RS04830 at 920.515 kb on + strand, within MMP_RS04830 at 920.532 kb on - strand, within MMP_RS04830 at 920.533 kb on + strand, within MMP_RS04830 at 920.547 kb on - strand, within MMP_RS04830 at 920.653 kb on + strand, within MMP_RS04830 at 920.791 kb on - strand, within MMP_RS04830 at 920.791 kb on - strand, within MMP_RS04830 at 920.792 kb on + strand, within MMP_RS04830 at 920.810 kb on - strand, within MMP_RS04830 at 920.819 kb on - strand, within MMP_RS04830 at 920.847 kb on + strand, within MMP_RS04830 at 920.906 kb on - strand at 920.907 kb on + strand at 920.910 kb on - strand at 920.934 kb on + strand at 920.996 kb on - strand at 921.005 kb on - strand at 921.006 kb on + strand at 921.055 kb on - strand, within MMP_RS04835 at 921.107 kb on - strand, within MMP_RS04835 at 921.107 kb on - strand, within MMP_RS04835 at 921.160 kb on - strand, within MMP_RS04835 at 921.161 kb on + strand, within MMP_RS04835 at 921.167 kb on + strand, within MMP_RS04835 at 921.383 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.434 kb on - strand, within MMP_RS04835 at 921.543 kb on + strand, within MMP_RS04835 at 921.643 kb on - strand at 921.710 kb on - strand, within MMP_RS04840 at 921.711 kb on + strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.717 kb on - strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.737 kb on - strand, within MMP_RS04840 at 921.738 kb on + strand, within MMP_RS04840 at 921.776 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.785 kb on - strand, within MMP_RS04840 at 921.898 kb on - strand, within MMP_RS04840 at 921.940 kb on + strand, within MMP_RS04840 at 921.998 kb on - strand at 921.999 kb on + strand at 922.031 kb on - strand at 922.032 kb on + strand at 922.032 kb on + strand at 922.046 kb on + strand at 922.063 kb on - strand at 922.063 kb on - strand at 922.074 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.078 kb on + strand at 922.080 kb on - strand at 922.086 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.101 kb on - strand at 922.102 kb on + strand at 922.108 kb on - strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.124 kb on + strand at 922.124 kb on + strand at 922.127 kb on + strand at 922.129 kb on - strand at 922.138 kb on - strand at 922.139 kb on + strand at 922.139 kb on + strand at 922.177 kb on - strand at 922.184 kb on + strand at 922.258 kb on - strand, within MMP_RS04845 at 922.290 kb on - strand, within MMP_RS04845 at 922.292 kb on - strand, within MMP_RS04845 at 922.469 kb on - strand, within MMP_RS04845 at 922.570 kb on - strand, within MMP_RS04845 at 922.601 kb on + strand, within MMP_RS04845 at 922.637 kb on - strand, within MMP_RS04845
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 40 minute oxygen exposure remove 919,972 - MMP_RS04825 0.66 +0.8 919,980 + MMP_RS04825 0.67 +0.1 920,014 + MMP_RS04825 0.71 +1.1 920,048 - MMP_RS04825 0.75 -0.5 920,048 - MMP_RS04825 0.75 +0.7 920,054 + MMP_RS04825 0.76 +0.4 920,060 + MMP_RS04825 0.76 +0.3 920,101 + MMP_RS04825 0.81 +0.8 920,101 + MMP_RS04825 0.81 -0.1 920,109 - MMP_RS04825 0.82 +0.3 920,109 - MMP_RS04825 0.82 +0.0 920,162 - MMP_RS04825 0.89 +0.4 920,169 - MMP_RS04825 0.90 -0.2 920,169 - MMP_RS04825 0.90 +1.6 920,170 + +0.2 920,170 + -1.8 920,173 - +0.6 920,173 - +0.4 920,173 - -0.1 920,174 + +0.3 920,174 + +0.3 920,174 + +0.4 920,196 + +0.8 920,201 - -0.5 920,225 + -1.1 920,238 - +0.7 920,238 - +0.6 920,242 - +0.4 920,243 + -2.2 920,243 + +0.7 920,243 + -1.9 920,266 - +0.9 920,266 - +1.1 920,266 - +1.1 920,266 - -2.5 920,267 + +0.5 920,267 + +0.2 920,294 + -0.2 920,316 - +1.7 920,319 - +0.3 920,319 - -0.1 920,323 - +1.2 920,358 - +0.4 920,359 + +0.3 920,359 + +0.3 920,359 + +0.8 920,402 - MMP_RS04830 0.13 +0.6 920,402 - MMP_RS04830 0.13 +0.4 920,403 + MMP_RS04830 0.13 +0.4 920,406 - MMP_RS04830 0.14 +0.6 920,406 - MMP_RS04830 0.14 +0.0 920,407 + MMP_RS04830 0.14 +1.0 920,411 - MMP_RS04830 0.15 +1.0 920,429 - MMP_RS04830 0.18 +0.8 920,430 + MMP_RS04830 0.18 +0.4 920,444 - MMP_RS04830 0.20 +1.1 920,478 + MMP_RS04830 0.26 +0.1 920,478 + MMP_RS04830 0.26 -0.3 920,478 + MMP_RS04830 0.26 +0.5 920,480 - MMP_RS04830 0.26 +0.9 920,480 - MMP_RS04830 0.26 +0.7 920,514 - MMP_RS04830 0.32 +0.2 920,515 + MMP_RS04830 0.32 +0.7 920,532 - MMP_RS04830 0.34 -0.0 920,533 + MMP_RS04830 0.35 +0.4 920,547 - MMP_RS04830 0.37 +1.1 920,653 + MMP_RS04830 0.54 +0.3 920,791 - MMP_RS04830 0.77 -0.9 920,791 - MMP_RS04830 0.77 +0.8 920,792 + MMP_RS04830 0.77 -0.1 920,810 - MMP_RS04830 0.80 +0.2 920,819 - MMP_RS04830 0.82 -0.1 920,847 + MMP_RS04830 0.86 -0.1 920,906 - +0.4 920,907 + +0.5 920,910 - +1.0 920,934 + +0.5 920,996 - +0.6 921,005 - -0.3 921,006 + +0.5 921,055 - MMP_RS04835 0.15 -1.6 921,107 - MMP_RS04835 0.23 -1.2 921,107 - MMP_RS04835 0.23 -0.7 921,160 - MMP_RS04835 0.30 -2.1 921,161 + MMP_RS04835 0.30 -1.7 921,167 + MMP_RS04835 0.31 -1.9 921,383 + MMP_RS04835 0.63 -1.7 921,408 + MMP_RS04835 0.66 -0.8 921,408 + MMP_RS04835 0.66 -1.3 921,434 - MMP_RS04835 0.70 -1.6 921,543 + MMP_RS04835 0.86 -1.6 921,643 - -0.3 921,710 - MMP_RS04840 0.15 -0.3 921,711 + MMP_RS04840 0.15 -1.1 921,715 - MMP_RS04840 0.16 -0.6 921,715 - MMP_RS04840 0.16 +0.3 921,716 + MMP_RS04840 0.16 +0.9 921,716 + MMP_RS04840 0.16 -0.0 921,717 - MMP_RS04840 0.16 -0.2 921,718 + MMP_RS04840 0.17 +0.4 921,718 + MMP_RS04840 0.17 -0.4 921,737 - MMP_RS04840 0.22 +0.3 921,738 + MMP_RS04840 0.22 -0.7 921,776 + MMP_RS04840 0.32 -0.2 921,783 + MMP_RS04840 0.34 +0.2 921,783 + MMP_RS04840 0.34 +0.4 921,785 - MMP_RS04840 0.35 +0.0 921,898 - MMP_RS04840 0.65 +0.3 921,940 + MMP_RS04840 0.76 +0.3 921,998 - +1.0 921,999 + +0.5 922,031 - +0.1 922,032 + +0.3 922,032 + -0.0 922,046 + +0.7 922,063 - +0.2 922,063 - +0.5 922,074 - -0.2 922,077 - +0.6 922,077 - -0.0 922,077 - -2.4 922,078 + +0.9 922,080 - +0.1 922,086 - +0.9 922,097 - -0.4 922,097 - +0.5 922,097 - -2.4 922,097 - +0.5 922,098 + +0.4 922,098 + -0.0 922,098 + +0.6 922,098 + -2.0 922,101 - -0.0 922,102 + -0.0 922,108 - +0.2 922,109 + -2.5 922,109 + +0.4 922,109 + +0.9 922,124 + +0.3 922,124 + +0.4 922,127 + +0.6 922,129 - +0.7 922,138 - +0.7 922,139 + -0.2 922,139 + +0.2 922,177 - +1.0 922,184 + -0.9 922,258 - MMP_RS04845 0.14 +0.5 922,290 - MMP_RS04845 0.17 +0.5 922,292 - MMP_RS04845 0.17 +0.8 922,469 - MMP_RS04845 0.34 -0.4 922,570 - MMP_RS04845 0.44 +0.1 922,601 + MMP_RS04845 0.47 -0.2 922,637 - MMP_RS04845 0.50 +0.4
Or see this region's nucleotide sequence