Experiment: H2 McCas with 40 minute oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04590 and MMP_RS04595 are separated by 30 nucleotides MMP_RS04595 and MMP_RS04600 are separated by 109 nucleotides MMP_RS04600 and MMP_RS04605 are separated by 154 nucleotides
MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336
_RS04590
MMP_RS04595: MMP_RS04595 - hypothetical protein, at 877,367 to 877,864
_RS04595
MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140
_RS04600
MMP_RS04605: MMP_RS04605 - cobalt ECF transporter T component CbiQ, at 879,295 to 880,062
_RS04605
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 876.998 kb on - strand, within MMP_RS04590 at 877.043 kb on - strand, within MMP_RS04590 at 877.120 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.138 kb on - strand, within MMP_RS04590 at 877.170 kb on - strand, within MMP_RS04590 at 877.174 kb on - strand, within MMP_RS04590 at 877.209 kb on + strand, within MMP_RS04590 at 877.233 kb on + strand, within MMP_RS04590 at 877.272 kb on + strand at 877.363 kb on - strand at 877.482 kb on + strand, within MMP_RS04595 at 877.539 kb on - strand, within MMP_RS04595 at 877.550 kb on - strand, within MMP_RS04595 at 877.560 kb on + strand, within MMP_RS04595 at 877.571 kb on - strand, within MMP_RS04595 at 877.743 kb on + strand, within MMP_RS04595 at 877.766 kb on + strand, within MMP_RS04595 at 877.846 kb on + strand at 877.846 kb on + strand at 877.895 kb on - strand at 877.910 kb on - strand at 877.915 kb on - strand at 877.957 kb on - strand at 877.960 kb on - strand at 877.994 kb on - strand at 877.995 kb on + strand at 877.995 kb on + strand at 877.997 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.013 kb on - strand at 878.027 kb on + strand at 878.066 kb on + strand at 878.067 kb on - strand at 878.118 kb on + strand, within MMP_RS04600 at 878.118 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.137 kb on + strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.169 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.171 kb on - strand, within MMP_RS04600 at 878.172 kb on + strand, within MMP_RS04600 at 878.173 kb on - strand, within MMP_RS04600 at 878.182 kb on - strand, within MMP_RS04600 at 878.338 kb on - strand, within MMP_RS04600 at 878.339 kb on + strand, within MMP_RS04600 at 878.354 kb on + strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.374 kb on + strand, within MMP_RS04600 at 878.409 kb on - strand, within MMP_RS04600 at 878.410 kb on + strand, within MMP_RS04600 at 878.513 kb on - strand, within MMP_RS04600 at 878.524 kb on + strand, within MMP_RS04600 at 878.528 kb on + strand, within MMP_RS04600 at 878.531 kb on - strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.710 kb on - strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.728 kb on + strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.736 kb on + strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.739 kb on + strand, within MMP_RS04600 at 878.740 kb on - strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.765 kb on - strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.882 kb on - strand, within MMP_RS04600 at 878.891 kb on - strand, within MMP_RS04600 at 878.922 kb on - strand, within MMP_RS04600 at 879.062 kb on - strand at 879.062 kb on - strand at 879.062 kb on - strand at 879.063 kb on + strand at 879.133 kb on + strand at 879.133 kb on + strand at 879.162 kb on + strand at 879.164 kb on + strand at 879.164 kb on + strand at 879.166 kb on - strand at 879.167 kb on + strand at 879.169 kb on - strand at 879.169 kb on - strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.189 kb on - strand at 879.193 kb on - strand at 879.194 kb on + strand at 879.194 kb on + strand at 879.201 kb on - strand at 879.202 kb on + strand at 879.236 kb on + strand at 879.236 kb on + strand at 879.237 kb on - strand at 879.244 kb on + strand at 879.250 kb on + strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.306 kb on - strand at 879.322 kb on - strand at 879.333 kb on - strand at 879.450 kb on + strand, within MMP_RS04605 at 879.563 kb on + strand, within MMP_RS04605 at 879.577 kb on - strand, within MMP_RS04605 at 879.592 kb on + strand, within MMP_RS04605 at 879.656 kb on + strand, within MMP_RS04605 at 879.993 kb on - strand at 880.000 kb on - strand at 880.087 kb on + strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.090 kb on + strand at 880.094 kb on - strand at 880.110 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.122 kb on - strand at 880.128 kb on + strand at 880.132 kb on - strand at 880.132 kb on - strand at 880.139 kb on - strand at 880.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 40 minute oxygen exposure remove 876,998 - MMP_RS04590 0.65 -0.5 877,043 - MMP_RS04590 0.70 -0.6 877,120 + MMP_RS04590 0.78 -0.3 877,133 + MMP_RS04590 0.79 -0.3 877,133 + MMP_RS04590 0.79 -0.5 877,133 + MMP_RS04590 0.79 -0.5 877,138 - MMP_RS04590 0.79 -1.1 877,170 - MMP_RS04590 0.83 -0.4 877,174 - MMP_RS04590 0.83 -0.9 877,209 + MMP_RS04590 0.87 +0.1 877,233 + MMP_RS04590 0.89 -0.9 877,272 + -1.4 877,363 - -0.5 877,482 + MMP_RS04595 0.23 -0.5 877,539 - MMP_RS04595 0.35 -0.4 877,550 - MMP_RS04595 0.37 -1.3 877,560 + MMP_RS04595 0.39 -0.5 877,571 - MMP_RS04595 0.41 +0.2 877,743 + MMP_RS04595 0.76 -0.8 877,766 + MMP_RS04595 0.80 +0.1 877,846 + -1.0 877,846 + -0.9 877,895 - -1.8 877,910 - -0.1 877,915 - -0.9 877,957 - +0.6 877,960 - +0.6 877,994 - -0.1 877,995 + -0.3 877,995 + +0.7 877,997 - -0.2 878,013 - -0.5 878,013 - -0.8 878,013 - -0.9 878,027 + +0.4 878,066 + +0.4 878,067 - +0.1 878,118 + MMP_RS04600 0.12 -0.0 878,118 + MMP_RS04600 0.12 -0.3 878,137 + MMP_RS04600 0.14 -0.0 878,137 + MMP_RS04600 0.14 -0.6 878,169 - MMP_RS04600 0.17 -0.8 878,169 - MMP_RS04600 0.17 -0.9 878,171 - MMP_RS04600 0.17 -0.4 878,171 - MMP_RS04600 0.17 +0.3 878,172 + MMP_RS04600 0.17 -0.9 878,173 - MMP_RS04600 0.17 -0.5 878,182 - MMP_RS04600 0.18 -0.2 878,338 - MMP_RS04600 0.31 -1.9 878,339 + MMP_RS04600 0.31 +0.2 878,354 + MMP_RS04600 0.33 -1.4 878,373 - MMP_RS04600 0.34 -0.3 878,373 - MMP_RS04600 0.34 +0.6 878,373 - MMP_RS04600 0.34 +0.5 878,374 + MMP_RS04600 0.34 -0.3 878,409 - MMP_RS04600 0.37 -0.8 878,410 + MMP_RS04600 0.37 -1.3 878,513 - MMP_RS04600 0.46 +0.2 878,524 + MMP_RS04600 0.47 -0.6 878,528 + MMP_RS04600 0.47 -0.9 878,531 - MMP_RS04600 0.48 -0.5 878,532 + MMP_RS04600 0.48 +0.5 878,532 + MMP_RS04600 0.48 -0.3 878,709 + MMP_RS04600 0.63 -0.2 878,709 + MMP_RS04600 0.63 -0.8 878,710 - MMP_RS04600 0.63 -0.6 878,711 + MMP_RS04600 0.63 -0.0 878,711 + MMP_RS04600 0.63 -0.7 878,728 + MMP_RS04600 0.65 -1.2 878,732 - MMP_RS04600 0.65 -0.7 878,732 - MMP_RS04600 0.65 -1.1 878,735 - MMP_RS04600 0.65 -0.2 878,735 - MMP_RS04600 0.65 -0.0 878,736 + MMP_RS04600 0.65 -1.2 878,738 - MMP_RS04600 0.65 -0.2 878,738 - MMP_RS04600 0.65 -0.1 878,739 + MMP_RS04600 0.66 -1.0 878,740 - MMP_RS04600 0.66 -0.7 878,741 + MMP_RS04600 0.66 -1.1 878,741 + MMP_RS04600 0.66 +0.4 878,765 - MMP_RS04600 0.68 -0.7 878,776 + MMP_RS04600 0.69 -1.1 878,776 + MMP_RS04600 0.69 -0.9 878,779 - MMP_RS04600 0.69 -0.9 878,779 - MMP_RS04600 0.69 +0.1 878,882 - MMP_RS04600 0.78 -2.1 878,891 - MMP_RS04600 0.79 +0.0 878,922 - MMP_RS04600 0.81 -0.1 879,062 - -1.2 879,062 - +0.5 879,062 - -0.7 879,063 + -1.3 879,133 + -0.7 879,133 + -0.5 879,162 + -0.9 879,164 + -0.2 879,164 + -0.8 879,166 - -0.3 879,167 + -2.0 879,169 - -0.0 879,169 - -0.6 879,170 + +0.1 879,170 + +0.5 879,170 + -0.2 879,189 - -0.8 879,193 - -0.9 879,194 + +0.2 879,194 + -0.3 879,201 - -0.4 879,202 + -2.2 879,236 + -0.1 879,236 + +0.1 879,237 - -0.3 879,244 + +0.7 879,250 + +0.5 879,252 - +0.4 879,252 - -0.5 879,252 - -0.4 879,252 - -0.5 879,252 - +0.2 879,252 - -0.5 879,252 - +0.5 879,253 + +0.5 879,253 + -0.1 879,253 + -0.1 879,306 - -0.5 879,322 - -2.2 879,333 - -1.4 879,450 + MMP_RS04605 0.20 -2.1 879,563 + MMP_RS04605 0.35 -1.7 879,577 - MMP_RS04605 0.37 -2.4 879,592 + MMP_RS04605 0.39 -1.8 879,656 + MMP_RS04605 0.47 -2.0 879,993 - -1.8 880,000 - -1.9 880,087 + -2.2 880,089 - -1.6 880,089 - -3.6 880,089 - -1.2 880,090 + -2.4 880,094 - -1.0 880,110 + -1.5 880,117 + -1.3 880,117 + -2.3 880,117 + -1.1 880,117 + -2.2 880,122 - -0.7 880,128 + -2.2 880,132 - -1.0 880,132 - -1.1 880,139 - -0.5 880,140 + -0.7
Or see this region's nucleotide sequence