Experiment: H2 McCas with 40 minute oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03735 and MMP_RS03740 overlap by 1 nucleotides MMP_RS03740 and MMP_RS03745 are separated by 10 nucleotides
MMP_RS03735: MMP_RS03735 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 706,252 to 707,988
_RS03735
MMP_RS03740: MMP_RS03740 - indolepyruvate oxidoreductase subunit beta, at 707,988 to 708,554
_RS03740
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1 at 707.079 kb on + strand, within MMP_RS03735 at 707.302 kb on + strand, within MMP_RS03735 at 707.392 kb on + strand, within MMP_RS03735 at 707.969 kb on - strand at 707.969 kb on - strand at 707.970 kb on + strand at 707.970 kb on + strand at 707.981 kb on - strand at 708.133 kb on + strand, within MMP_RS03740 at 708.226 kb on + strand, within MMP_RS03740 at 708.263 kb on + strand, within MMP_RS03740 at 708.292 kb on - strand, within MMP_RS03740 at 708.413 kb on + strand, within MMP_RS03740 at 708.553 kb on + strand at 708.582 kb on - strand at 708.624 kb on - strand at 708.646 kb on + strand at 708.656 kb on + strand at 708.750 kb on - strand, within MMP_RS03745 at 708.792 kb on + strand, within MMP_RS03745 at 708.864 kb on + strand, within MMP_RS03745 at 709.115 kb on + strand, within MMP_RS03745 at 709.123 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.262 kb on - strand, within MMP_RS03745 at 709.265 kb on + strand, within MMP_RS03745 at 709.413 kb on + strand, within MMP_RS03745 at 709.416 kb on - strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 40 minute oxygen exposure remove 707,079 + MMP_RS03735 0.48 +1.1 707,302 + MMP_RS03735 0.60 -0.2 707,392 + MMP_RS03735 0.66 -0.1 707,969 - +1.2 707,969 - +0.0 707,970 + -0.2 707,970 + +1.5 707,981 - +1.1 708,133 + MMP_RS03740 0.26 +0.2 708,226 + MMP_RS03740 0.42 +0.4 708,263 + MMP_RS03740 0.49 +1.2 708,292 - MMP_RS03740 0.54 +0.4 708,413 + MMP_RS03740 0.75 +0.5 708,553 + -0.7 708,582 - +0.4 708,624 - -1.3 708,646 + +0.0 708,656 + +1.6 708,750 - MMP_RS03745 0.14 +0.8 708,792 + MMP_RS03745 0.17 -0.3 708,864 + MMP_RS03745 0.23 +0.2 709,115 + MMP_RS03745 0.42 -0.1 709,123 - MMP_RS03745 0.43 +0.1 709,262 - MMP_RS03745 0.54 -0.6 709,262 - MMP_RS03745 0.54 -2.0 709,265 + MMP_RS03745 0.54 -0.3 709,413 + MMP_RS03745 0.65 -2.1 709,416 - MMP_RS03745 0.66 -0.1 709,417 + MMP_RS03745 0.66 +0.3 709,417 + MMP_RS03745 0.66 +1.2
Or see this region's nucleotide sequence