Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00700

Experiment: H2 McCas with 40 minute oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00690 and MMP_RS00695 are separated by 12 nucleotidesMMP_RS00695 and MMP_RS00700 are separated by 11 nucleotidesMMP_RS00700 and MMP_RS00705 are separated by 12 nucleotidesMMP_RS00705 and MMP_RS00710 are separated by 3 nucleotides MMP_RS00690: MMP_RS00690 - MBL fold metallo-hydrolase, at 125,924 to 126,541 _RS00690 MMP_RS00695: MMP_RS00695 - biotin--[acetyl-CoA-carboxylase] ligase, at 126,554 to 127,249 _RS00695 MMP_RS00700: MMP_RS00700 - OB-fold nucleic acid binding domain-containing protein, at 127,261 to 127,647 _RS00700 MMP_RS00705: MMP_RS00705 - hypothetical protein, at 127,660 to 127,977 _RS00705 MMP_RS00710: MMP_RS00710 - hypothetical protein, at 127,981 to 128,889 _RS00710 Position (kb) 127 128Strain fitness (log2 ratio) -2 -1 0 1at 126.263 kb on + strand, within MMP_RS00690at 126.271 kb on - strand, within MMP_RS00690at 126.280 kb on - strand, within MMP_RS00690at 126.305 kb on - strand, within MMP_RS00690at 126.305 kb on - strand, within MMP_RS00690at 126.305 kb on - strand, within MMP_RS00690at 126.318 kb on + strand, within MMP_RS00690at 126.391 kb on - strand, within MMP_RS00690at 126.391 kb on - strand, within MMP_RS00690at 126.396 kb on - strand, within MMP_RS00690at 126.491 kb on - strandat 126.671 kb on - strand, within MMP_RS00695at 126.821 kb on - strand, within MMP_RS00695at 127.200 kb on - strandat 127.262 kb on - strandat 127.276 kb on - strandat 127.283 kb on + strandat 127.327 kb on - strand, within MMP_RS00700at 127.332 kb on + strand, within MMP_RS00700at 127.356 kb on - strand, within MMP_RS00700at 127.496 kb on - strand, within MMP_RS00700at 127.517 kb on - strand, within MMP_RS00700at 127.563 kb on + strand, within MMP_RS00700at 127.831 kb on + strand, within MMP_RS00705at 127.841 kb on + strand, within MMP_RS00705at 128.064 kb on + strandat 128.205 kb on - strand, within MMP_RS00710at 128.546 kb on + strand, within MMP_RS00710at 128.546 kb on + strand, within MMP_RS00710

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 40 minute oxygen exposure
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126,263 + MMP_RS00690 0.55 +0.0
126,271 - MMP_RS00690 0.56 +0.7
126,280 - MMP_RS00690 0.58 -1.0
126,305 - MMP_RS00690 0.62 -1.6
126,305 - MMP_RS00690 0.62 +1.0
126,305 - MMP_RS00690 0.62 +0.0
126,318 + MMP_RS00690 0.64 -1.2
126,391 - MMP_RS00690 0.76 +1.2
126,391 - MMP_RS00690 0.76 +0.1
126,396 - MMP_RS00690 0.76 +1.0
126,491 - +0.1
126,671 - MMP_RS00695 0.17 -1.4
126,821 - MMP_RS00695 0.38 -2.5
127,200 - -1.9
127,262 - +1.1
127,276 - +0.6
127,283 + -1.8
127,327 - MMP_RS00700 0.17 +0.7
127,332 + MMP_RS00700 0.18 +1.0
127,356 - MMP_RS00700 0.25 +0.5
127,496 - MMP_RS00700 0.61 +0.3
127,517 - MMP_RS00700 0.66 +0.3
127,563 + MMP_RS00700 0.78 +0.5
127,831 + MMP_RS00705 0.54 -0.0
127,841 + MMP_RS00705 0.57 +1.5
128,064 + -0.2
128,205 - MMP_RS00710 0.25 +0.6
128,546 + MMP_RS00710 0.62 -1.3
128,546 + MMP_RS00710 0.62 +0.8

Or see this region's nucleotide sequence